View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6535_low_10 (Length: 229)
Name: NF6535_low_10
Description: NF6535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6535_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 15 - 211
Target Start/End: Original strand, 35681802 - 35681998
Alignment:
| Q |
15 |
gatgaaaattggggcgaacaaatgattagagaaatgatgtggaatgagatgctacatcaccatcctgaagttgcttatgccaatgcataagtgtttctaa |
114 |
Q |
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| T |
35681802 |
gatgaaaattggggcgaacaaatgattagagaaatgatgtggaatgagatgctacatcaccatcctgaagttgcttatgccaatgcataagtgtttctaa |
35681901 |
T |
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| Q |
115 |
ttcacggtttttatgtaggagtgattttgttttttaatagagaagcttcaacccgaagtgcttatagctaccggatttttgcttgtaccatgttact |
211 |
Q |
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| T |
35681902 |
ttcacagtttttatgtagtagtgattttgttttttaatagagaagcttcaacccgaagtgcttatagctaccggatttttgcttgtaccatgttact |
35681998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 35686970 - 35687055
Alignment:
| Q |
15 |
gatgaaaattggggcgaacaaatgattagagaaatgatgtggaatgagatgctacatcaccatcctgaagttgcttatgccaatgc |
100 |
Q |
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| T |
35686970 |
gatgaaatatggggtgaagagatgataagagaaatgatgttgaatgagatgctgcattaccatcctgaagctgcttatgccaatgc |
35687055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 34 - 119
Target Start/End: Complemental strand, 23684138 - 23684053
Alignment:
| Q |
34 |
aaatgattagagaaatgatgtggaatgagatgctacatcaccatcctgaagttgcttatgccaatgcataagtgtttctaattcac |
119 |
Q |
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| T |
23684138 |
aaatgattagagaaatgatgtggaatgagatgcttcattaccatcctgaagctgcttttgtcaatgcatagatgtttctacttcac |
23684053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 34 - 119
Target Start/End: Complemental strand, 24056375 - 24056290
Alignment:
| Q |
34 |
aaatgattagagaaatgatgtggaatgagatgctacatcaccatcctgaagttgcttatgccaatgcataagtgtttctaattcac |
119 |
Q |
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| T |
24056375 |
aaatgattagagaaatgatgtggaatgagatgcttcattaccatcctgaagctgcttttgtcaatgcatagatgtttctacttcac |
24056290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 119
Target Start/End: Complemental strand, 23668592 - 23668512
Alignment:
| Q |
39 |
attagagaaatgatgtggaatgagatgctacatcaccatcctgaagttgcttatgccaatgcataagtgtttctaattcac |
119 |
Q |
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| T |
23668592 |
attagggaaatgatgtggaatgagatgcttcattaccatcatgaagctgcttttgtcaatgcatagatgtttctacttcac |
23668512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 119
Target Start/End: Complemental strand, 24040868 - 24040788
Alignment:
| Q |
39 |
attagagaaatgatgtggaatgagatgctacatcaccatcctgaagttgcttatgccaatgcataagtgtttctaattcac |
119 |
Q |
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| T |
24040868 |
attagggaaatgatgtggaatgagatgcttcattaccatcatgaagctgcttttgtcaatgcatagatgtttctacttcac |
24040788 |
T |
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