View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6535_low_2 (Length: 511)
Name: NF6535_low_2
Description: NF6535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6535_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 49 - 492
Target Start/End: Complemental strand, 29672836 - 29672393
Alignment:
| Q |
49 |
tggaaccttctacaaaaagcagccgccaccgcccttgacttcgtcgaaacaaccttaatcaaacaagaacagaaacacccactaccaaaaacctccgacc |
148 |
Q |
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| T |
29672836 |
tggaaccttctacaaaaagccgccgccaccgccctcgacttcgtcgaaacaaccttaatcaaacaagaacaaaaacacccactacccaaaacctccgacc |
29672737 |
T |
|
| Q |
149 |
cacgtgtccaaattgccggtaacttcgccccagtaccggaacacccggtaacccaatctcttccaattaccggcaaaatcccaaccaacattgacggtgt |
248 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29672736 |
cacgtgttcaaattgccggtaacttcgccccagtaccggaacacccggtaacccaatctcttccaattaccggcaaaatcccaaccaacattgacggtgt |
29672637 |
T |
|
| Q |
249 |
ttacctccgtaacggcgccaatccactttacgagccagtagccggtcaccacttcttcgacggagacggtatggtccacgccgttaaattcacaaacggc |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29672636 |
ttacctccgtaacggcgccaatccactttacgagccagtagccggtcaccacttcttcgacggagacggtatggtccacgccgttaaattcacaaacggc |
29672537 |
T |
|
| Q |
349 |
tccgtcagttactcttgccgcttcaccgaaacccaccgtttggcccaagaaaaagccctgggtcggcccgtttttccaaaagccataggtgaacttcatg |
448 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
29672536 |
tccgtaagttactcttgccgcttcaccgaaacccaccgtttggcccaagaaaaagccctgggccggcccgtttttccaaaagccataggtgaacttcatg |
29672437 |
T |
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| Q |
449 |
gtcattcaggcatagcacgtttagcactttactatgctcgtagc |
492 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29672436 |
gtcattcaggcatagcacgtttagcactttactatgctcgtagc |
29672393 |
T |
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