View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6535_low_4 (Length: 410)
Name: NF6535_low_4
Description: NF6535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6535_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 18 - 400
Target Start/End: Complemental strand, 26665953 - 26665571
Alignment:
| Q |
18 |
tgtgaaacttgactttgaaggtatgatatggctccaacacatccataaacaggatctctcactcttgcatttgcttcaaaaactaaactgttcactgctt |
117 |
Q |
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| T |
26665953 |
tgtgaaacttgactttgaaggtatgatatggctccaacacatccataaacaggatctctcactcttgcatttgcttcaaaaactaaactgttcactgctt |
26665854 |
T |
|
| Q |
118 |
ctgatctttgatgaattggaagctcctgcaaacaaattacaaaacataccaatattgagtcatgtttattgcacaaccaagtacaataaaaagatgctag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26665853 |
ctgatctttgatgaattggaagctcctgcaaacaaattacaaaacataccaatattgagtcatgtttattgcacaaccaagtacaataaaaagatgctag |
26665754 |
T |
|
| Q |
218 |
taattaaaatatttatattgtaaagataaatattttagtagtcacaatcctttgcttaatgtagactcaaatttagcacatggccaagagtttttgggct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26665753 |
taattaaaatatttatattgtaaagataaatattttagtagtcacaatcctttgcttaatgtagactcaaatttagcacatggccaagagtttttgggct |
26665654 |
T |
|
| Q |
318 |
tgaaacttggaacaatgtgtagggttttaaataaggccgttgtgtagggctttaaataaggctgttactttttccatcctatg |
400 |
Q |
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| T |
26665653 |
tgaaacttggaacaatgtgtaggattttaaataaggccgttgtgtagggctttaaataaggtcgttatttttcccatcctatg |
26665571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 21 - 144
Target Start/End: Complemental strand, 32140992 - 32140869
Alignment:
| Q |
21 |
gaaacttgactttgaaggtatgatatggctccaacacatccataaacaggatctctcactcttgcatttgcttcaaaaactaaactgttcactgcttctg |
120 |
Q |
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| T |
32140992 |
gaaacttggttttgaaggtatgatattgctccaacacaaccataaacagggtccttcactcttgcatttgcttcatatactaagctgcttactgcatcag |
32140893 |
T |
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| Q |
121 |
atctttgatgaattggaagctcct |
144 |
Q |
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|||||| ||||| ||||| |||| |
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| T |
32140892 |
ctctttgttgaataggaagttcct |
32140869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 21 - 145
Target Start/End: Complemental strand, 35919768 - 35919644
Alignment:
| Q |
21 |
gaaacttgactttgaaggtatgatatggctccaacacatccataaacaggatctctcactcttgcatttgcttcaaaaactaaactgttcactgcttctg |
120 |
Q |
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||||||||| |||| | ||| ||||| ||||||||||| |||||||| ||||| ||||||||||||||||||||| | ||||||||||| ||||| |||| |
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| T |
35919768 |
gaaacttgattttgcaagtaagatattgctccaacacagccataaactggatccctcactcttgcatttgcttcatagactaaactgtttactgcatctg |
35919669 |
T |
|
| Q |
121 |
atctttgatgaattggaagctcctg |
145 |
Q |
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|||||| |||| |||||||||||| |
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| T |
35919668 |
ctctttggtgaactggaagctcctg |
35919644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 36231942 - 36232014
Alignment:
| Q |
57 |
catccataaacaggatctctcactcttgcatttgcttcaaaaactaaactgttcactgcttctgatctttgat |
129 |
Q |
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||||||||||| |||||||| | |||| ||||||||||| |||||||||| || |||| |||| |||||||| |
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| T |
36231942 |
catccataaactggatctcttagtcttacatttgcttcataaactaaactatttgctgcatctgctctttgat |
36232014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 28556368 - 28556421
Alignment:
| Q |
42 |
gatatggctccaacacatccataaacaggatctctcactcttgcatttgcttca |
95 |
Q |
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| T |
28556368 |
gatatggctcccacacatccatacacaggatcccttactcttgcatttgcttca |
28556421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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