View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6535_low_5 (Length: 342)

Name: NF6535_low_5
Description: NF6535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6535_low_5
NF6535_low_5
[»] chr3 (7 HSPs)
chr3 (3-342)||(26665133-26665472)
chr3 (289-339)||(53852032-53852082)
chr3 (1-72)||(25365457-25365528)
chr3 (7-65)||(12704657-12704715)
chr3 (4-65)||(25074787-25074848)
chr3 (4-72)||(15864831-15864899)
chr3 (5-65)||(52369774-52369834)
[»] chr8 (3 HSPs)
chr8 (1-65)||(40063946-40064010)
chr8 (3-123)||(35431080-35431202)
chr8 (299-333)||(37507538-37507572)
[»] chr6 (4 HSPs)
chr6 (6-65)||(34446565-34446624)
chr6 (6-72)||(12235512-12235578)
chr6 (4-65)||(6389741-6389802)
chr6 (5-65)||(12086345-12086405)
[»] chr4 (5 HSPs)
chr4 (4-53)||(20743290-20743339)
chr4 (4-65)||(16402211-16402272)
chr4 (75-124)||(17876237-17876286)
chr4 (4-65)||(24343505-24343566)
chr4 (3-48)||(32910548-32910593)
[»] chr5 (3 HSPs)
chr5 (75-127)||(27932306-27932358)
chr5 (1-63)||(18607099-18607161)
chr5 (295-339)||(22017727-22017770)
[»] chr2 (2 HSPs)
chr2 (1-65)||(25544476-25544540)
chr2 (4-52)||(10535772-10535820)
[»] chr1 (4 HSPs)
chr1 (287-339)||(35814464-35814516)
chr1 (1-53)||(40747785-40747837)
chr1 (6-65)||(21145466-21145526)
chr1 (1-53)||(42004959-42005011)
[»] chr7 (3 HSPs)
chr7 (1-62)||(22683758-22683819)
chr7 (1-53)||(7133290-7133342)
chr7 (5-53)||(23930218-23930266)


Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 3 - 342
Target Start/End: Original strand, 26665133 - 26665472
Alignment:
Q  3 accgacacggataataatttgagaatatgacgtgattcactgtaatcatagacgtcgtgtcgggcaccgaaa--tgtccgacaccagaacacccctaatt 100  Q
    ||||||||  ||||||||||||||| |||||||||||||||||||| |||| ||||||||||| |||||||   ||||||||||||||||||||||||||    
T  26665133 accgacacaaataataatttgagaaaatgacgtgattcactgtaattataggcgtcgtgtcggacaccgaagcgtgtccgacaccagaacacccctaatt 26665232  T
Q  101 caaggagtgtttgtacttcataggacataacatgacttggtataagtttttatgaggtacatacttcaatgttttaaaacgcagcagtgatnnnnnnngt 200  Q
    ||||||||||| ||||   ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||       ||    
T  26665233 caaggagtgttcgtaca--ataggacataacatgacttggtataagtttttatgaggtgcatacttcaatgttttaaaacgcagcagcgataacaaaagt 26665330  T
Q  201 gtcacaaatcttaattaaggagaatgatgttgcagtcattcaaaatactgatgttgaattccaaatcccagtcatatacctttatttaaagactgcttct 300  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26665331 gtcacaaatcttaattaaggagaatgatgttggagtcattcaaaatactgatgttgaattccaaatcccagtcatatacctttatttaaagactgcttct 26665430  T
Q  301 tttcccaccatatgagtttcttgcgcgccctatgcagtttga 342  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  26665431 tttcccaccatatgagtttctcgcgcgccctatgcagtttga 26665472  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 289 - 339
Target Start/End: Original strand, 53852032 - 53852082
Alignment:
Q  289 aagactgcttcttttcccaccatatgagtttcttgcgcgccctatgcagtt 339  Q
    ||||| ||||||||||||||| |||||||||||||| ||||||||| ||||    
T  53852032 aagaccgcttcttttcccaccgtatgagtttcttgctcgccctatgtagtt 53852082  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 25365457 - 25365528
Alignment:
Q  1 acaccgacacggataataatttgagaatatgacgtgattcactgtaatcatagacgtcgtgtcgggcaccga 72  Q
    |||||| || ||||||||||||||||||||||| | ||||  ||||||||||   |||||||||| ||||||    
T  25365457 acaccggcatggataataatttgagaatatgacataattcggtgtaatcataagtgtcgtgtcggacaccga 25365528  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 12704715 - 12704657
Alignment:
Q  7 acacggataataatttgagaatatgacgtgattcactgtaatcatagacgtcgtgtcgg 65  Q
    |||||||||||||||||| || ||||| | ||||| |||||||||||  ||||||||||    
T  12704715 acacggataataatttgaaaaaatgacataattcaatgtaatcataggtgtcgtgtcgg 12704657  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 25074787 - 25074848
Alignment:
Q  4 ccgacacggataataatttgagaatatgacgtgattcactgtaatcatagacgtcgtgtcgg 65  Q
    ||||||| |||||||||||||||| ||||| | ||| | ||||||||||| ||| |||||||    
T  25074787 ccgacaccgataataatttgagaaaatgacataattgagtgtaatcataggcgttgtgtcgg 25074848  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 15864831 - 15864899
Alignment:
Q  4 ccgacacggataataatttgagaatatgacgtgattcactgtaatcatagacgtcgtgtcgggcaccga 72  Q
    ||||||||||||||||||||| || ||||  | ||| | |||||||||||  |||||||||| ||||||    
T  15864831 ccgacacggataataatttgaaaaaatgatataatttagtgtaatcataggtgtcgtgtcggacaccga 15864899  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 52369774 - 52369834
Alignment:
Q  5 cgacacggataataatttgagaatatgacgtgattcactgtaatcatagacgtcgtgtcgg 65  Q
    ||||| ||||||||||||||||| || || | ||||| |||||||||||  ||||||||||    
T  52369774 cgacatggataataatttgagaaaattacataattcaatgtaatcataggtgtcgtgtcgg 52369834  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 40063946 - 40064010
Alignment:
Q  1 acaccgacacggataataatttgagaatatgacgtgattcactgtaatcatagacgtcgtgtcgg 65  Q
    ||||||||||  ||||||||||||||| ||||| | ||||| ||||||||||| |||||||||||    
T  40063946 acaccgacaccaataataatttgagaaaatgacataattcattgtaatcataggcgtcgtgtcgg 40064010  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 123
Target Start/End: Complemental strand, 35431202 - 35431080
Alignment:
Q  3 accgacacggataataatttgagaatatgacgtgattcactgtaatcatagacgtcgtgtcgggcaccga--aatgtccgacaccagaacacccctaatt 100  Q
    ||||| ||||||||||||||||||| ||||| |  || | |||||||||||  |||||||||| || |||   || ||| ||||||| |||||||||||     
T  35431202 accgaaacggataataatttgagaaaatgacatattttagtgtaatcataggtgtcgtgtcggacatcgatgcatatccaacaccaggacacccctaatc 35431103  T
Q  101 caaggagtgtttgtacttcatag 123  Q
    |||  ||||| ||| ||||||||    
T  35431102 caaaaagtgtctgtgcttcatag 35431080  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 333
Target Start/End: Original strand, 37507538 - 37507572
Alignment:
Q  299 cttttcccaccatatgagtttcttgcgcgccctat 333  Q
    ||||||||||| |||||||||||||||||||||||    
T  37507538 cttttcccaccctatgagtttcttgcgcgccctat 37507572  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 34446565 - 34446624
Alignment:
Q  6 gacacggataataatttgagaatatgacgtgattcactgtaatcatagacgtcgtgtcgg 65  Q
    |||||||||||||||||||||| ||||| | ||||| |||||||||||  ||||||||||    
T  34446565 gacacggataataatttgagaaaatgacataattcagtgtaatcataggtgtcgtgtcgg 34446624  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 12235578 - 12235512
Alignment:
Q  6 gacacggataataatttgagaatatgacgtgattcactgtaatcatagacgtcgtgtcgggcaccga 72  Q
    |||||||||||||||| ||||| ||||| | ||||| |||||||||||  |||||||| | ||||||    
T  12235578 gacacggataataattagagaaaatgacataattcagtgtaatcataggtgtcgtgtccgacaccga 12235512  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 6389741 - 6389802
Alignment:
Q  4 ccgacacggataataatttgagaatatgacgtgattcactgtaatcatagacgtcgtgtcgg 65  Q
    |||||||||||||||||||||||| ||||  | ||| | |||||||||||  ||||||||||    
T  6389741 ccgacacggataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcgg 6389802  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 12086405 - 12086345
Alignment:
Q  5 cgacacggataataatttgagaatatgacgtgattcactgtaatcatagacgtcgtgtcgg 65  Q
    ||||||||||||||||||||||  ||||| | ||||| | |||||||||  ||||||||||    
T  12086405 cgacacggataataatttgagataatgacataattcagtttaatcataggtgtcgtgtcgg 12086345  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 20743339 - 20743290
Alignment:
Q  4 ccgacacggataataatttgagaatatgacgtgattcactgtaatcatag 53  Q
    |||||||||||||||||||||||| ||||| | ||||| |||||||||||    
T  20743339 ccgacacggataataatttgagaaaatgacataattcagtgtaatcatag 20743290  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 16402272 - 16402211
Alignment:
Q  4 ccgacacggataataatttgagaatatgacgtgattcactgtaatcatagacgtcgtgtcgg 65  Q
    |||||||||||||||||||||||| || || |||| || |||||| ||||  ||||||||||    
T  16402272 ccgacacggataataatttgagaaaataacatgatacagtgtaattatagctgtcgtgtcgg 16402211  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 17876237 - 17876286
Alignment:
Q  75 tgtccgacaccagaacacccctaattcaaggagtgtttgtacttcatagg 124  Q
    ||||||||||||| |||| |||||| |||||||||| ||| |||||||||    
T  17876237 tgtccgacaccaggacacacctaatccaaggagtgtctgtgcttcatagg 17876286  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 24343505 - 24343566
Alignment:
Q  4 ccgacacggataataatttgagaatatgacgtgattcactgtaatcatagacgtcgtgtcgg 65  Q
    |||||||||||||||||||||||| || || | ||||| |||||| ||||  ||||||||||    
T  24343505 ccgacacggataataatttgagaaaattacataattcagtgtaattataggtgtcgtgtcgg 24343566  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 32910548 - 32910593
Alignment:
Q  3 accgacacggataataatttgagaatatgacgtgattcactgtaat 48  Q
    ||||||||||||||||||||||||| ||||| | ||||| ||||||    
T  32910548 accgacacggataataatttgagaaaatgacataattcagtgtaat 32910593  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 127
Target Start/End: Original strand, 27932306 - 27932358
Alignment:
Q  75 tgtccgacaccagaacacccctaattcaaggagtgtttgtacttcataggaca 127  Q
    |||| |||||||| |||| |||||||| |||||||||||| ||||||||||||    
T  27932306 tgtcggacaccaggacacgcctaattcgaggagtgtttgtgcttcataggaca 27932358  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 18607161 - 18607099
Alignment:
Q  1 acaccgacacggataataatttgagaatatgacgtgattcactgtaatcatagacgtcgtgtc 63  Q
    ||||||||| ||||||||||||||||| || || | ||||| |||||||||||  ||||||||    
T  18607161 acaccgacatggataataatttgagaaaataacataattcaatgtaatcataggtgtcgtgtc 18607099  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 339
Target Start/End: Complemental strand, 22017770 - 22017727
Alignment:
Q  295 gcttcttttcccaccatatgagtttcttgcgcgccctatgcagtt 339  Q
    ||||||||||||||| |||||||||||||| || |||||||||||    
T  22017770 gcttcttttcccacc-tatgagtttcttgcacgtcctatgcagtt 22017727  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 25544476 - 25544540
Alignment:
Q  1 acaccgacacggataataatttgagaatatgacgtgattcactgtaatcatagacgtcgtgtcgg 65  Q
    ||||||||||| ||||||||||||||| ||||  | ||||| |||||||||||  ||||||||||    
T  25544476 acaccgacacgtataataatttgagaaaatgatataattcagtgtaatcataggtgtcgtgtcgg 25544540  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 10535820 - 10535772
Alignment:
Q  4 ccgacacggataataatttgagaatatgacgtgattcactgtaatcata 52  Q
    ||||||| |||||||||||||||| ||||| | ||||| ||||||||||    
T  10535820 ccgacaccgataataatttgagaaaatgacataattcagtgtaatcata 10535772  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 339
Target Start/End: Original strand, 35814464 - 35814516
Alignment:
Q  287 taaagactgcttcttttcccaccatatgagtttcttgcgcgccctatgcagtt 339  Q
    ||||||||||||||||| | ||| ||||||||||| ||||| |||||||||||    
T  35814464 taaagactgcttctttttctaccctatgagtttctcgcgcgtcctatgcagtt 35814516  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 40747837 - 40747785
Alignment:
Q  1 acaccgacacggataataatttgagaatatgacgtgattcactgtaatcatag 53  Q
    ||||||||||||||||||||||||||| ||||| | ||||| |||||| ||||    
T  40747837 acaccgacacggataataatttgagaaaatgacataattcaatgtaattatag 40747785  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 21145466 - 21145526
Alignment:
Q  6 gacacggataataatttgagaata-tgacgtgattcactgtaatcatagacgtcgtgtcgg 65  Q
    ||||||||||||||||||| || | |||| | ||||| ||||||||||| |||||||||||    
T  21145466 gacacggataataatttgaaaaaaatgacataattcagtgtaatcataggcgtcgtgtcgg 21145526  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 42005011 - 42004959
Alignment:
Q  1 acaccgacacggataataatttgagaatatgacgtgattcactgtaatcatag 53  Q
    |||| |||||||||||||||||||||| ||||| | ||| | |||||||||||    
T  42005011 acacagacacggataataatttgagaaaatgacataatttagtgtaatcatag 42004959  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 22683819 - 22683758
Alignment:
Q  1 acaccgacacggataataatttgagaatatgacgtgattcactgtaatcatagacgtcgtgt 62  Q
    ||||||| ||||||||||||||||||||||||  | ||||| || ||||||||  |||||||    
T  22683819 acaccgagacggataataatttgagaatatgatataattcagtgcaatcataggtgtcgtgt 22683758  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 7133342 - 7133290
Alignment:
Q  1 acaccgacacggataataatttgagaatatgacgtgattcactgtaatcatag 53  Q
    |||||||||| ||| |||||||||||| ||||| | ||||| |||||||||||    
T  7133342 acaccgacacagatgataatttgagaaaatgacataattcagtgtaatcatag 7133290  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 23930218 - 23930266
Alignment:
Q  5 cgacacggataataatttgagaatatgacgtgattcactgtaatcatag 53  Q
    ||||||||||| ||||||||||| ||||| | ||||| |||||||||||    
T  23930218 cgacacggatagtaatttgagaaaatgacataattcagtgtaatcatag 23930266  T

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