View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6535_low_7 (Length: 310)
Name: NF6535_low_7
Description: NF6535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6535_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 35341090 - 35341382
Alignment:
| Q |
1 |
ccacaatgatagtgaacaaacaaattcacaatttatattaagctcactcctaaaccatttaatttcctcccgcttacaaagcttcatcaccacctccagt |
100 |
Q |
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| T |
35341090 |
ccacaatgatagtgaacaaacaaattcacaatttatattaggctcgctcctaaaccatttaatttcctcccgcttacaaagcttcatcaccacctccagt |
35341189 |
T |
|
| Q |
101 |
ttgttgtttcatgacatcgatctctgcaccatttttcaatttgagctgaagttcatgaaaaacagaatcaaaatgaggaacattacataaaaattacttc |
200 |
Q |
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| T |
35341190 |
ttgttgtttcatgacatcgatctctgcaccatttttcaatttgagctgaagttcatgaaaaacagaatcaaaatgaggaacattacataaaaattacttc |
35341289 |
T |
|
| Q |
201 |
tgtacatgcagcaacatttataaggatgtgaagtaacaaaagagatatgacaaaatgacataatcatcattgggcgtgactgataccctttat |
293 |
Q |
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| T |
35341290 |
tgtacatgcagcaacatttataaggatgtgaagtaacaaaagagatatgacaaaatgacataatcatcattgggcgtgactgataccctttat |
35341382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 151
Target Start/End: Original strand, 35353598 - 35353694
Alignment:
| Q |
55 |
ccatttaatttcctcccgcttacaaagcttcatcaccacctccagtttgttgtttcatgacatcgatctctgcaccatttttcaatttgagctgaag |
151 |
Q |
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| T |
35353598 |
ccatttaatttcctccaacttacatagctacaacaccacctcctgattggtgtttcatggcatcaatcgtgtcaccatttttcaaattcagctgaag |
35353694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 15 - 142
Target Start/End: Complemental strand, 15492796 - 15492670
Alignment:
| Q |
15 |
aacaaacaaattcacaatttatattaagctcactcctaaaccatttaatttcctcccgcttacaaagcttcatcaccacctccagtttgttgtttcatga |
114 |
Q |
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||||||||||||||||||| || ||||||||||| || |||||||||||||| ||| |||||| |||| ||||||| || || ||||| ||||||||| |
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| T |
15492796 |
aacaaacaaattcacaattcatgttaagctcactgcttaaccatttaatttc-tccaacttacagagctgcatcaccgccgcctgtttgctgtttcatgc |
15492698 |
T |
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| Q |
115 |
catcgatctctgcaccatttttcaattt |
142 |
Q |
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| T |
15492697 |
catcgatctctgcaccattttccaattt |
15492670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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