View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6536_high_13 (Length: 235)
Name: NF6536_high_13
Description: NF6536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6536_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 217
Target Start/End: Complemental strand, 30723592 - 30723390
Alignment:
| Q |
15 |
agcagagaagggtagctctaaatatgtagtgatagaaagcttttttacatttcgtttcaagatgccagagatccatgtatttagaagggaaatatcatac |
114 |
Q |
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| T |
30723592 |
agcagagaagggtagctctaaatatgtagtgatagaaagcttttttacatttcgtttcaagatgccagagatccatgtatttagaagggaaatatcatac |
30723493 |
T |
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| Q |
115 |
ttgttagtgataacaagagaaaaactttcagcagtgttacttttagtaagatgaagtactctattgacaaagtttataaagtaccgttttccacctgatt |
214 |
Q |
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| T |
30723492 |
ttgttagtgataacaagagaaaaactttcagcagtgttacttttagtaagatgaagtgctctattgacaaagtttataaagtaccgttttccacctgatt |
30723393 |
T |
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| Q |
215 |
tct |
217 |
Q |
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||| |
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| T |
30723392 |
tct |
30723390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 215
Target Start/End: Complemental strand, 30715807 - 30715700
Alignment:
| Q |
108 |
atcatacttgttagtgataacaagagaaaaactttcagcagtgttacttttagtaagatgaagtactctattgacaaagtttataaagtaccgttttcca |
207 |
Q |
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| T |
30715807 |
atcatacttattagtgatcacaagagaaaaacattccacactataattctcattaagcagaagtgctctattgacaaagtttataaagtgttgttttcca |
30715708 |
T |
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| Q |
208 |
cctgattt |
215 |
Q |
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|||||||| |
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| T |
30715707 |
cctgattt |
30715700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 69 - 185
Target Start/End: Complemental strand, 9678650 - 9678534
Alignment:
| Q |
69 |
tttcaagatgccagagatccatgtatttagaagggaaatatcatacttgttagtgataacaagagaaaaactttcagcagtgttacttttagtaagatga |
168 |
Q |
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| T |
9678650 |
tttcaacatgcaagagatccatgtacttagaagagataggtcatacttattagtgatcacaagagaaaaactttccacattttcacttttagtaagaaga |
9678551 |
T |
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| Q |
169 |
agtactctattgacaaa |
185 |
Q |
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|| ||||||||||||| |
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| T |
9678550 |
agggctctattgacaaa |
9678534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 69 - 185
Target Start/End: Complemental strand, 13543594 - 13543478
Alignment:
| Q |
69 |
tttcaagatgccagagatccatgtatttagaagggaaatatcatacttgttagtgataacaagagaaaaactttcagcagtgttacttttagtaagatga |
168 |
Q |
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|||||| |||| ||||||||||||| ||||||| || | |||||||| |||||||| ||||||||||||||||| || | | ||||||||||||| || |
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| T |
13543594 |
tttcaacatgcaagagatccatgtacttagaagagataggtcatacttattagtgatcacaagagaaaaactttccacattttcacttttagtaagaaga |
13543495 |
T |
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| Q |
169 |
agtactctattgacaaa |
185 |
Q |
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|| ||||||||||||| |
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| T |
13543494 |
agggctctattgacaaa |
13543478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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