View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6536_high_14 (Length: 232)

Name: NF6536_high_14
Description: NF6536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6536_high_14
NF6536_high_14
[»] chr4 (12 HSPs)
chr4 (39-76)||(47376550-47376587)
chr4 (5-38)||(51783301-51783334)
chr4 (40-73)||(56083371-56083404)
chr4 (39-73)||(1995885-1995919)
chr4 (39-73)||(1997061-1997095)
chr4 (89-123)||(16314152-16314186)
chr4 (39-73)||(16314204-16314238)
chr4 (39-73)||(23506386-23506420)
chr4 (39-73)||(44353893-44353927)
chr4 (40-73)||(2751536-2751569)
chr4 (40-73)||(39661320-39661353)
chr4 (40-73)||(47861950-47861983)
[»] chr8 (5 HSPs)
chr8 (39-73)||(9755701-9755735)
chr8 (40-73)||(14099762-14099795)
chr8 (40-73)||(38973770-38973803)
chr8 (40-73)||(39004868-39004901)
chr8 (39-72)||(40463610-40463643)
[»] chr7 (3 HSPs)
chr7 (39-73)||(5769309-5769343)
chr7 (39-73)||(21261997-21262031)
chr7 (39-73)||(21263322-21263356)
[»] chr1 (8 HSPs)
chr1 (39-73)||(17240734-17240768)
chr1 (40-73)||(9008778-9008811)
chr1 (40-76)||(48030237-48030273)
chr1 (39-73)||(21747960-21747994)
chr1 (39-73)||(35713698-35713732)
chr1 (39-73)||(42097343-42097377)
chr1 (40-73)||(43402280-43402313)
chr1 (40-73)||(51676339-51676372)
[»] chr3 (6 HSPs)
chr3 (41-76)||(13865955-13865990)
chr3 (39-73)||(34799882-34799916)
chr3 (89-123)||(34801342-34801376)
chr3 (39-73)||(34801394-34801428)
chr3 (39-73)||(36438776-36438810)
chr3 (41-73)||(48537869-48537901)
[»] chr6 (5 HSPs)
chr6 (39-73)||(21382499-21382533)
chr6 (39-73)||(21383823-21383857)
chr6 (89-123)||(26544413-26544447)
chr6 (89-123)||(26545818-26545852)
chr6 (40-73)||(32146095-32146128)
[»] scaffold0408 (1 HSPs)
scaffold0408 (41-74)||(10104-10137)


Alignment Details
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 76
Target Start/End: Original strand, 47376550 - 47376587
Alignment:
Q  39 cccccctgccatttgggggtcttttggtatacccctgt 76  Q
    ||||||||||||||||||||||||||||||||||||||    
T  47376550 cccccctgccatttgggggtcttttggtatacccctgt 47376587  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 51783301 - 51783334
Alignment:
Q  5 agagatagagattattggaagaaaatgattcaat 38  Q
    ||||||||||||||||||||||||||||||||||    
T  51783301 agagatagagattattggaagaaaatgattcaat 51783334  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 73
Target Start/End: Original strand, 56083371 - 56083404
Alignment:
Q  40 ccccctgccatttgggggtcttttggtatacccc 73  Q
    ||||||||||||||||||||||||||||||||||    
T  56083371 ccccctgccatttgggggtcttttggtatacccc 56083404  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 73
Target Start/End: Original strand, 1995885 - 1995919
Alignment:
Q  39 cccccctgccatttgggggtcttttggtatacccc 73  Q
    |||||||||||| ||||||||||||||||||||||    
T  1995885 cccccctgccatatgggggtcttttggtatacccc 1995919  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 73
Target Start/End: Complemental strand, 1997095 - 1997061
Alignment:
Q  39 cccccctgccatttgggggtcttttggtatacccc 73  Q
    |||||||||||||| ||||||||||||||||||||    
T  1997095 cccccctgccatttaggggtcttttggtatacccc 1997061  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 16314186 - 16314152
Alignment:
Q  89 tggagattctcccttgtaaaataaagattctttgg 123  Q
    ||||||||| |||||||||||||||||||||||||    
T  16314186 tggagattcccccttgtaaaataaagattctttgg 16314152  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 73
Target Start/End: Complemental strand, 16314238 - 16314204
Alignment:
Q  39 cccccctgccatttgggggtcttttggtatacccc 73  Q
    |||||||||||||||||||||||||||| ||||||    
T  16314238 cccccctgccatttgggggtcttttggtttacccc 16314204  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 73
Target Start/End: Complemental strand, 23506420 - 23506386
Alignment:
Q  39 cccccctgccatttgggggtcttttggtatacccc 73  Q
    |||||||||||||||||||||||||||| ||||||    
T  23506420 cccccctgccatttgggggtcttttggtttacccc 23506386  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 73
Target Start/End: Original strand, 44353893 - 44353927
Alignment:
Q  39 cccccctgccatttgggggtcttttggtatacccc 73  Q
    ||||||||||||||||||| |||||||||||||||    
T  44353893 cccccctgccatttgggggacttttggtatacccc 44353927  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 73
Target Start/End: Original strand, 2751536 - 2751569
Alignment:
Q  40 ccccctgccatttgggggtcttttggtatacccc 73  Q
    |||||||||||||||||| |||||||||||||||    
T  2751536 ccccctgccatttgggggacttttggtatacccc 2751569  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 73
Target Start/End: Complemental strand, 39661353 - 39661320
Alignment:
Q  40 ccccctgccatttgggggtcttttggtatacccc 73  Q
    ||||||||||||||||||||||||||| ||||||    
T  39661353 ccccctgccatttgggggtcttttggtttacccc 39661320  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 73
Target Start/End: Original strand, 47861950 - 47861983
Alignment:
Q  40 ccccctgccatttgggggtcttttggtatacccc 73  Q
    ||||||||||||||||||||||||||| ||||||    
T  47861950 ccccctgccatttgggggtcttttggtttacccc 47861983  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 73
Target Start/End: Original strand, 9755701 - 9755735
Alignment:
Q  39 cccccctgccatttgggggtcttttggtatacccc 73  Q
    |||||||||||||||||||||||||||||||||||    
T  9755701 cccccctgccatttgggggtcttttggtatacccc 9755735  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 73
Target Start/End: Original strand, 14099762 - 14099795
Alignment:
Q  40 ccccctgccatttgggggtcttttggtatacccc 73  Q
    ||||||||||||||||||||||||||| ||||||    
T  14099762 ccccctgccatttgggggtcttttggtttacccc 14099795  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 73
Target Start/End: Original strand, 38973770 - 38973803
Alignment:
Q  40 ccccctgccatttgggggtcttttggtatacccc 73  Q
    ||||||||||||||||||| ||||||||||||||    
T  38973770 ccccctgccatttgggggttttttggtatacccc 38973803  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 73
Target Start/End: Original strand, 39004868 - 39004901
Alignment:
Q  40 ccccctgccatttgggggtcttttggtatacccc 73  Q
    ||||||||||||||||||| ||||||||||||||    
T  39004868 ccccctgccatttgggggttttttggtatacccc 39004901  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 72
Target Start/End: Complemental strand, 40463643 - 40463610
Alignment:
Q  39 cccccctgccatttgggggtcttttggtataccc 72  Q
    |||||||||||||||||||||||||||| |||||    
T  40463643 cccccctgccatttgggggtcttttggtttaccc 40463610  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 73
Target Start/End: Complemental strand, 5769343 - 5769309
Alignment:
Q  39 cccccctgccatttgggggtcttttggtatacccc 73  Q
    |||||||||||||||||||||||||||||||||||    
T  5769343 cccccctgccatttgggggtcttttggtatacccc 5769309  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 73
Target Start/End: Original strand, 21261997 - 21262031
Alignment:
Q  39 cccccctgccatttgggggtcttttggtatacccc 73  Q
    |||||||||||||| ||||||||||||||||||||    
T  21261997 cccccctgccatttaggggtcttttggtatacccc 21262031  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 73
Target Start/End: Complemental strand, 21263356 - 21263322
Alignment:
Q  39 cccccctgccatttgggggtcttttggtatacccc 73  Q
    |||||||||||| ||||||||||||||||||||||    
T  21263356 cccccctgccatatgggggtcttttggtatacccc 21263322  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 73
Target Start/End: Original strand, 17240734 - 17240768
Alignment:
Q  39 cccccctgccatttgggggtcttttggtatacccc 73  Q
    |||||||||||||||||||||||||||||||||||    
T  17240734 cccccctgccatttgggggtcttttggtatacccc 17240768  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 73
Target Start/End: Original strand, 9008778 - 9008811
Alignment:
Q  40 ccccctgccatttgggggtcttttggtatacccc 73  Q
    ||||||||||||||||||||||||||||||||||    
T  9008778 ccccctgccatttgggggtcttttggtatacccc 9008811  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 76
Target Start/End: Complemental strand, 48030273 - 48030237
Alignment:
Q  40 ccccctgccatttgggggtcttttggtatacccctgt 76  Q
    ||||||||||||||||||||||||| |||||||||||    
T  48030273 ccccctgccatttgggggtcttttgatatacccctgt 48030237  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 73
Target Start/End: Original strand, 21747960 - 21747994
Alignment:
Q  39 cccccctgccatttgggggtcttttggtatacccc 73  Q
    |||||||||||||||||||||||||||| ||||||    
T  21747960 cccccctgccatttgggggtcttttggtttacccc 21747994  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 73
Target Start/End: Complemental strand, 35713732 - 35713698
Alignment:
Q  39 cccccctgccatttgggggtcttttggtatacccc 73  Q
    |||||||||||| ||||||||||||||||||||||    
T  35713732 cccccctgccatatgggggtcttttggtatacccc 35713698  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 73
Target Start/End: Original strand, 42097343 - 42097377
Alignment:
Q  39 cccccctgccatttgggggtcttttggtatacccc 73  Q
    |||||||||||||||||||||||||||| ||||||    
T  42097343 cccccctgccatttgggggtcttttggtttacccc 42097377  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 73
Target Start/End: Original strand, 43402280 - 43402313
Alignment:
Q  40 ccccctgccatttgggggtcttttggtatacccc 73  Q
    ||||||||||||||||||||||||||| ||||||    
T  43402280 ccccctgccatttgggggtcttttggtttacccc 43402313  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 73
Target Start/End: Complemental strand, 51676372 - 51676339
Alignment:
Q  40 ccccctgccatttgggggtcttttggtatacccc 73  Q
    |||||||| |||||||||||||||||||||||||    
T  51676372 ccccctgctatttgggggtcttttggtatacccc 51676339  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 76
Target Start/End: Complemental strand, 13865990 - 13865955
Alignment:
Q  41 cccctgccatttgggggtcttttggtatacccctgt 76  Q
    ||||| ||||||||||||||||||||||||||||||    
T  13865990 cccctaccatttgggggtcttttggtatacccctgt 13865955  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 73
Target Start/End: Original strand, 34799882 - 34799916
Alignment:
Q  39 cccccctgccatttgggggtcttttggtatacccc 73  Q
    |||||||||||||||||||||||||||| ||||||    
T  34799882 cccccctgccatttgggggtcttttggtttacccc 34799916  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 34801376 - 34801342
Alignment:
Q  89 tggagattctcccttgtaaaataaagattctttgg 123  Q
    ||||||||| |||||||||||||||||||||||||    
T  34801376 tggagattcccccttgtaaaataaagattctttgg 34801342  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 73
Target Start/End: Complemental strand, 34801428 - 34801394
Alignment:
Q  39 cccccctgccatttgggggtcttttggtatacccc 73  Q
    |||||||||||||||||||||||||||| ||||||    
T  34801428 cccccctgccatttgggggtcttttggtttacccc 34801394  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 73
Target Start/End: Complemental strand, 36438810 - 36438776
Alignment:
Q  39 cccccctgccatttgggggtcttttggtatacccc 73  Q
    |||||||||||||||||||||||||||| ||||||    
T  36438810 cccccctgccatttgggggtcttttggtttacccc 36438776  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 48537869 - 48537901
Alignment:
Q  41 cccctgccatttgggggtcttttggtatacccc 73  Q
    |||||||||||||||||||||||||| ||||||    
T  48537869 cccctgccatttgggggtcttttggtttacccc 48537901  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 73
Target Start/End: Original strand, 21382499 - 21382533
Alignment:
Q  39 cccccctgccatttgggggtcttttggtatacccc 73  Q
    |||||||||||| ||||||||||||||||||||||    
T  21382499 cccccctgccatatgggggtcttttggtatacccc 21382533  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 73
Target Start/End: Complemental strand, 21383857 - 21383823
Alignment:
Q  39 cccccctgccatttgggggtcttttggtatacccc 73  Q
    |||||||||||||| ||||||||||||||||||||    
T  21383857 cccccctgccatttaggggtcttttggtatacccc 21383823  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 123
Target Start/End: Original strand, 26544413 - 26544447
Alignment:
Q  89 tggagattctcccttgtaaaataaagattctttgg 123  Q
    ||||||||| |||||||||||||||||||||||||    
T  26544413 tggagattcccccttgtaaaataaagattctttgg 26544447  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 26545852 - 26545818
Alignment:
Q  89 tggagattctcccttgtaaaataaagattctttgg 123  Q
    ||||||||| |||||||||||||||||||||||||    
T  26545852 tggagattcccccttgtaaaataaagattctttgg 26545818  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 73
Target Start/End: Complemental strand, 32146128 - 32146095
Alignment:
Q  40 ccccctgccatttgggggtcttttggtatacccc 73  Q
    ||||||||||||||||||||||||||| ||||||    
T  32146128 ccccctgccatttgggggtcttttggtttacccc 32146095  T

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Target: scaffold0408 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 74
Target Start/End: Original strand, 10104 - 10137
Alignment:
Q  41 cccctgccatttgggggtcttttggtatacccct 74  Q
    |||||||||||||||||||||||||| |||||||    
T  10104 cccctgccatttgggggtcttttggtttacccct 10137  T

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