View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6536_high_9 (Length: 302)
Name: NF6536_high_9
Description: NF6536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6536_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 3082436 - 3082179
Alignment:
| Q |
1 |
tgatccaccacgttcaagcaccaaaaccctatgattttgggacagtgttgcagccaaaggacaccctgcagtgccaccaccaattatgatgtaatcatag |
100 |
Q |
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| T |
3082436 |
tgatccaccacgttcaagcaccaaaaccctatgattttgggacagtgttgcagccaaaggacaccctgcggtgccaccaccaactatgatgtaatcatag |
3082337 |
T |
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| Q |
101 |
aaggatatgattggtgctgaagttgcatcttgcataaaactgtattttctacctgtatctgtatataatcatga--nnnnnnnnnagttttacacctttt |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3082336 |
taggatatgattggtgctgaagttgcatcttgcataaaactgtattttctacctgtatctgtatataatcatgattttttttattagttttacacctttt |
3082237 |
T |
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| Q |
199 |
ccaattgctagcaacatttacttattggtaaataaaataaaacgttaggtaattttct |
256 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3082236 |
ccaattgctagcaacatttacttattggtaaataaaataaaaccttaggtaattttct |
3082179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 3090792 - 3090535
Alignment:
| Q |
1 |
tgatccaccacgttcaagcaccaaaaccctatgattttgggacagtgttgcagccaaaggacaccctgcagtgccaccaccaattatgatgtaatcatag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3090792 |
tgatccaccacgttcaagcaccaaaaccctatgatttttggacagtgttgcagccaaaggacaccctgcagtgccaccaccaattatgatgtaatcatag |
3090693 |
T |
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| Q |
101 |
aaggatatgattggtgctgaagttgcatcttgcataaaactgtattttctacctgtatctgtatataatcatga--nnnnnnnnnagttttacacctttt |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3090692 |
aaggatatgattggtgctgaagttgcatcttgcataaaactgtattttctacctgtatctgtatataatcatgattttttttattagttttacacctttt |
3090593 |
T |
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| Q |
199 |
ccaattgctagcaacatttacttattggtaaataaaataaaacgttaggtaattttct |
256 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| |||||||| |||| |
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| T |
3090592 |
ccaattgctagcaacatttatttattggtaaataaaataaaaccctaggtaatgttct |
3090535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 99
Target Start/End: Complemental strand, 5499501 - 5499448
Alignment:
| Q |
46 |
tgttgcagccaaaggacaccctgcagtgccaccaccaattatgatgtaatcata |
99 |
Q |
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||||||||| ||||||||||||||||| ||||| || | ||| ||||||||||| |
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| T |
5499501 |
tgttgcagctaaaggacaccctgcagttccacctcccactattatgtaatcata |
5499448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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