View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6536_low_1 (Length: 861)
Name: NF6536_low_1
Description: NF6536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6536_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 3e-90; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 21 - 264
Target Start/End: Original strand, 1744060 - 1744301
Alignment:
| Q |
21 |
gatgatattctagaaagtcttttgcttgttaggtaggcatcatctcaatcatatgttaaggtgatctgtaatattcacttttgagactttttgcaatgtg |
120 |
Q |
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| T |
1744060 |
gatgagattctagaaagtcttttgcttgttaggtaggcatcatc--aatcatatattaaggtgatctgtattattcacttttgagactttttgcattgtg |
1744157 |
T |
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| Q |
121 |
gtgtggtgccatgaaataatcctcaaccccacatgcccaatatttttatatgaacaatcataatttaaatgtgtttttcttacatggagcccaaacctta |
220 |
Q |
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| T |
1744158 |
gtgtggtgccctgaaatactccataaccccacatgcccaatttttttatatgaacaatcatgatttaaatgtgtttttcttacatggagcccaaacctta |
1744257 |
T |
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| Q |
221 |
tccattttttagtcatttatatgaataatcaacacatgatttct |
264 |
Q |
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| T |
1744258 |
tccatattttagtcatttctgtgaatgtgcaacacatgatttct |
1744301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 484 - 722
Target Start/End: Original strand, 1744486 - 1744724
Alignment:
| Q |
484 |
gtgtcacgtttaattttcaatgtagtgtttcttccaattatacccgataattaatattatgtgcacgaccaagttaatatattcgacttcagatttagga |
583 |
Q |
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| T |
1744486 |
gtgtcacgtttaattttcaatgtggtgtttcttccaattatacgcgataactaatcttatgtgcaccactaagttaa-atattccacttcacatttaggt |
1744584 |
T |
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| Q |
584 |
attagtgttaatagtgaaaatgagaacgtaaaatagtttacttgcataacaagtaatgtactggtagtgtaactaacttg-agttaattggttagacagt |
682 |
Q |
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| T |
1744585 |
attagtgttaatagtgaaaattagaaggtaaaatagtttacttgcataacaagtaatgtactagtagtgtaactaacttgcagtgaattggttagacagt |
1744684 |
T |
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| Q |
683 |
tagttagattgataactgaatctagtttgcgataatatag |
722 |
Q |
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| T |
1744685 |
ttgttagaatgacaactaaatctagtttgcaatcatatag |
1744724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 30 - 207
Target Start/End: Original strand, 1749222 - 1749400
Alignment:
| Q |
30 |
ctagaaagtcttttgcttgttaggtaggcatcatctcaatcatatgttaaggtgatctgtaatattcacttttgagac---tttttgcaatgtggtgtgg |
126 |
Q |
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| T |
1749222 |
ctagaaagacttttgcttgttaggtaggcatcatc--agtcatatgttaaggtgatctgtaatattcacttttgaggcatttttttgcattgtgctgtgg |
1749319 |
T |
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| Q |
127 |
tgccatgaaataatcctcaaccccacatgcccaatatttttatatgaacaatcataatttaaatgtgtttttcttacatgg |
207 |
Q |
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| T |
1749320 |
ttccatgaaatactccataaatccacattcccaatttttttatatgaacaatcataatttaaatgtgtttttcttacatgg |
1749400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 352 - 409
Target Start/End: Original strand, 1744322 - 1744379
Alignment:
| Q |
352 |
acaaagtaatttcaagaaggaaaaacacatttggaagtatttttattcattttaatga |
409 |
Q |
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| T |
1744322 |
acaaagtaatttcaagaaggaaaaacacatttggaagtatttttattcattttaatga |
1744379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 416 - 465
Target Start/End: Original strand, 1744415 - 1744464
Alignment:
| Q |
416 |
tatttaaaaataatattttatctcaaaatgagggttacttgactctaaac |
465 |
Q |
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| T |
1744415 |
tatttaaaaataatatttaatctcaaaacgagggttacttgattctaaac |
1744464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 286 - 321
Target Start/End: Original strand, 1749465 - 1749500
Alignment:
| Q |
286 |
tcatcaacaacttttaaaactggtcatgctttccat |
321 |
Q |
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| T |
1749465 |
tcatcaacaacttgtaaaactggtcatgctttccat |
1749500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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