View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6536_low_11 (Length: 251)
Name: NF6536_low_11
Description: NF6536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6536_low_11 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 8 - 251
Target Start/End: Original strand, 31599900 - 31600157
Alignment:
| Q |
8 |
agattattctggtatccaacttttagagaatacttttaatcctcttgagttcacttcataaatctgtacaaaaatatttgaaattattcactaattaatt |
107 |
Q |
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| T |
31599900 |
agatttttctggtatccaacttttagagaatacttttaatcctcttgagttcacttcataaatctgtacaaaaatatttgaaattactcactaattaatt |
31599999 |
T |
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| Q |
108 |
aatta------------gtactttgtaacgagtcaaagagctaa--gagacaatatagaaaataggaatgtgaaccctaatgaaagtcaaacatattctt |
193 |
Q |
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||||| |||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31600000 |
aattaattaattaattagtactttgtaacgagtcaaagaactaaaagagacaatacagaaaataggaatgtgaaccctaatgaaagtcaaacatattctt |
31600099 |
T |
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| Q |
194 |
tgaccttatatccctagccttctcttattcataaaggtcaacattcctattttctata |
251 |
Q |
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|||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
31600100 |
tgactttatttccctagccttctcttattcataaaggtccacattcctattttctata |
31600157 |
T |
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