View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6536_low_12 (Length: 238)
Name: NF6536_low_12
Description: NF6536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6536_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 31600143 - 31600364
Alignment:
| Q |
1 |
ttcctattttctatattgcccttttcagttctttgactcattacatacttatctgatactataagttagagattaaatgaagaatttttaagagttctct |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
31600143 |
ttcctattttctatattgcccttttcaattctttgactcattacatacttctctgatactatgagttggagattaaatgaagaatttttaagagttctct |
31600242 |
T |
|
| Q |
101 |
acctcttccatcttcactccatcagctggtaactgcaaaaataattcaagaaacatataaatgagctgcaactaatcctctctgtgttggacattttatt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31600243 |
acctcttccatcttcactccatcagctggtaactgcaaaaataattcaagaaacatataaatgagctgcaactaatcctctctgtgttggacattttatt |
31600342 |
T |
|
| Q |
201 |
tcattatatgatataaaaatat |
222 |
Q |
| |
|
||||| |||||||||||||||| |
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|
| T |
31600343 |
tcattgtatgatataaaaatat |
31600364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 6302562 - 6302521
Alignment:
| Q |
5 |
tattttctatattgcccttttcagttctttgactcattacat |
46 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||| |
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|
| T |
6302562 |
tattttctatattgcccttttaagctctttgactcattacat |
6302521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 29753429 - 29753389
Alignment:
| Q |
5 |
tattttctatattgcccttttcagttctttgactcattaca |
45 |
Q |
| |
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|||||||||||||||| |||||| |||||||||||||||| |
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| T |
29753429 |
tattttctatattgccattttcatctctttgactcattaca |
29753389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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