View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6536_low_15 (Length: 208)
Name: NF6536_low_15
Description: NF6536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6536_low_15 |
 | |
|
| [»] scaffold1112 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 112; Significance: 8e-57; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 6325285 - 6325424
Alignment:
| Q |
9 |
atgaaaatacaacacataaattgttctaaagcaagctacac-----atacccattttacttgttttattgaatggtttcaaacgtattaaaccacaaaag |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6325285 |
atgaaaatacaacacataaattgttctaaagcaagctacacaacacatacccattttacttgttttattgaatggtttcaaacgtattaaaccacaaaag |
6325384 |
T |
|
| Q |
104 |
tgcctcgtcatttatcctatgttgacaaataaaatatcca |
143 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
6325385 |
tgcctcgtcttttatcatatgttgacaaataaaatatcca |
6325424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 26 - 99
Target Start/End: Original strand, 6345764 - 6345838
Alignment:
| Q |
26 |
aaattgttctaaagcaagctacacataccca-ttttacttgttttattgaatggtttcaaacgtattaaaccaca |
99 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
6345764 |
aaattgttctaaagcaagctacccatacccaattttacttggtttattgaagggtttcaaacgtattaaaccaca |
6345838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 99
Target Start/End: Original strand, 6330384 - 6330457
Alignment:
| Q |
26 |
aaattgttctaaagcaagctacacatacccattttacttgttttattgaatggtttcaaacgtattaaaccaca |
99 |
Q |
| |
|
||||||||||||||||| ||| |||| | |||||||||||||| ||||| ||||| |||||||||||| |||| |
|
|
| T |
6330384 |
aaattgttctaaagcaacctatgcatatcgattttacttgttttgttgaagggttttaaacgtattaaatcaca |
6330457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1112 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold1112
Description:
Target: scaffold1112; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 595 - 515
Alignment:
| Q |
19 |
aacacataaattgttctaaagcaagctacacatacccattttacttgttttattgaatggtttcaaacgtattaaaccaca |
99 |
Q |
| |
|
|||||| |||||||||||||||||||| ||| || | ||||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
595 |
aacacacaaattgttctaaagcaagctccacgtatcgattttacttgttttattgatgggtttcaaaggtattaaaccaca |
515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University