View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6536_low_4 (Length: 450)
Name: NF6536_low_4
Description: NF6536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6536_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 6184775 - 6185207
Alignment:
| Q |
1 |
tagttgatgcttgaagtctaattcgcttattgaatttctgaataaattcttccaccctcttattgagatcttcatttgacatcttagaaaactcattttc |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6184775 |
tagttgatgcttgaagtctaatttgcttattgaatttctgaataaattcttccaccctcttattgagatcttcatttgacatcttagaaaactcattttc |
6184874 |
T |
|
| Q |
101 |
ttcttctatttttggttccatcttcatagactctaaccttctcactgagttcctcctttcatcaatcacaacatgcttggctctattgtgtctataagat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6184875 |
ttcttctatttttggttccatcttcatagactctaaccttctcactgagttcctcctttcatcaatcacaacatgcttggctctattgtgtctataagat |
6184974 |
T |
|
| Q |
201 |
ttacttcttcggtagattgatcttgtaggaaatgttgctttctctaattcatgttccttgtgaacatcatcaccatctacttgcaatagaagtgttgatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6184975 |
ttacttcttcggtagattgatcttgtaggaaatgttgctttctctaattcatgttccttgtgaacatcatcaccatctacttgcaatagaagtgttgatt |
6185074 |
T |
|
| Q |
301 |
tcttcttctcatttgcactatcatcactagtcctaattttctttggttgattttgtacgacaatttccaacacacgttcggggacaattgtttctttttc |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6185075 |
tcttcttctcatttgcactatcatcactagtcctaattttctttggttgattttgaacgacaatttccaacacacgttcggggacaattgtttctttttc |
6185174 |
T |
|
| Q |
401 |
ctcttgaaagaactcttggttggaattaataat |
433 |
Q |
| |
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|||||| |||||||||||||||||||||||||| |
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| T |
6185175 |
ctcttgcaagaactcttggttggaattaataat |
6185207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 4e-51; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 45336479 - 45336664
Alignment:
| Q |
1 |
tagttgatgcttgaagtctaattcgcttattgaatttctgaataaattcttccaccctcttattgagatcttcatttgacatcttagaaaactcattttc |
100 |
Q |
| |
|
||||||||||||| ||||| ||| |||||||||||||||||||||| |||||||| ||||||||| |||| ||||| |||||||||||||||||||| |
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| T |
45336479 |
tagttgatgcttggagtctgatttgcttattgaatttctgaataaactcttccacactcttattgcgatcctcattcgacatcttagaaaactcatt--- |
45336575 |
T |
|
| Q |
101 |
ttcttctatttttggttccatcttcatagactctaaccttctcactgagttcctcctttcatcaatcacaacatgcttggctctattgt |
189 |
Q |
| |
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|||||||| |||| |||| |||||||| | ||||||||||||||||| ||| ||||||||||||| ||||||| |||||||||||||| |
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| T |
45336576 |
ttcttctacttttagttctatcttcatgtaatctaaccttctcactgaattcttcctttcatcaataacaacatacttggctctattgt |
45336664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 237 - 389
Target Start/End: Original strand, 45336679 - 45336828
Alignment:
| Q |
237 |
gctttctctaattcatgttccttgtgaacatcatcaccatctacttgcaatagaagtgttgatttcttcttctcatttgcactatcatcactagtcctaa |
336 |
Q |
| |
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|||||||||||| |||||||||| ||| ||||||||||||||| ||||||| ||||||||| |||||||||||||| | ||||||||| ||| | || |
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| T |
45336679 |
gctttctctaatccatgttccttatgaccatcatcaccatctatttgcaattcaagtgttga---cttcttctcatttgtagtatcatcaccagtacaaa |
45336775 |
T |
|
| Q |
337 |
ttttctttggttgattttgtacgacaatttccaacacacgttcggggacaatt |
389 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
45336776 |
ttttctttggttgattttgtaccacaatttccaacacacgttcggggacaatt |
45336828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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