View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6536_low_5 (Length: 393)
Name: NF6536_low_5
Description: NF6536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6536_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 83 - 386
Target Start/End: Original strand, 43289522 - 43289825
Alignment:
| Q |
83 |
ggaacaaagctatcagcacaagcattcgttcacgtctcagcaaactctgccgcgaaggtcaacctcatctcgctcttcatcttctcgattctcttcctcg |
182 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43289522 |
ggaacaaagctatcagcacaagcattcgttcacgtctcagcaaactctgccgcgaaggtcaacctcatctcgctcttcatcttctcgattctcttcctcg |
43289621 |
T |
|
| Q |
183 |
tccttccaccgtcgtctggaactccgtcatcatcggcttcatctgcaacaacttgcctcatcaagctcttcttttatacgccaaaatgagatcaaattct |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43289622 |
tccttccaccgtcgtctggaactccgtcatcatcggcttcatctgcaacaacttgcctcatcaagctcttcttttatacgccaaaatgagatcaaattct |
43289721 |
T |
|
| Q |
283 |
tcttgttctacttttgatccttatacattctcttccactcttaaagcttgtgctttaactaaagatattcttactggaaaagctatacattctcatattc |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
43289722 |
tcttgttctacttttgatccttatacattctcttccactcttaaagcttgtgctttaactaaagatattcttactggaaaagctatacattctcattttc |
43289821 |
T |
|
| Q |
383 |
ttcg |
386 |
Q |
| |
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|||| |
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| T |
43289822 |
ttcg |
43289825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 83 - 386
Target Start/End: Original strand, 52105046 - 52105341
Alignment:
| Q |
83 |
ggaacaaagctatcagcacaagcattcgttcacgtctcagcaaactctgccgcgaaggtcaacctcatctcgctcttcatcttctcgattctcttcctcg |
182 |
Q |
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|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
52105046 |
ggaacaaagcaatcagcacaaacattcgttcacgtctcagcaaactctgccgcgaaggtcaacctcatctcgctcttcatcttgttgattctcttcctcg |
52105145 |
T |
|
| Q |
183 |
tccttccaccgtcgtctggaactccgtcatcatcggcttcatctgcaacaacttgcctcatcaagctcttcttttatacgccaaaatgagatcaaattct |
282 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
52105146 |
tccttccaccgtcgtctggaactccgtcatcaccggcttcatctgcaacaacttgcctcaccaagctcttcttttatacgccaaaatgagatcaaa---t |
52105242 |
T |
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| Q |
283 |
tcttgttctacttttgatccttatacattctcttccactcttaaagcttgtgctttaactaaagatattcttactggaaaagctatacattctcatattc |
382 |
Q |
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||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||| |
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| T |
52105243 |
tcttgttctactttt-attcttatacattctcttccactcttaaagcttgtgctttaactaaagatattgtta----aaaagctatacattctcattttc |
52105337 |
T |
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