View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6536_low_7 (Length: 350)
Name: NF6536_low_7
Description: NF6536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6536_low_7 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 68 - 342
Target Start/End: Original strand, 1815460 - 1815735
Alignment:
| Q |
68 |
atgatgattcatgaagcaagtagtg-actctcctctacatttatgtctgcattgatccaagagtgcttatccattaacctcattccctccaattccatag |
166 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1815460 |
atgatgattcatgaagcaagtagtggactctcctctacattaaggtctgcattgatccaagagtgcttatccattaacctcattccctccaattccatag |
1815559 |
T |
|
| Q |
167 |
ccacttccttcatgcttggtctttcttcccctctaagtctcaaacagtttgctgcaagaacagccacctccttgatctcttgtttgttttcttcattcca |
266 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||||||||| || |||||||||||||||||| ||||| |||||||||||||||||||||| |
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|
| T |
1815560 |
ccacttccttcatgcttggtctttcctcccctataagtctcaaacagttcgccgcaagaacagccacctccatgatcacttgtttgttttcttcattcca |
1815659 |
T |
|
| Q |
267 |
caaaccatcttgaataacttcaaacacattatcctttttcaagcaagacagaaagtgcatagcaagacttcttctc |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||| |
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|
| T |
1815660 |
caaaccatcttgaataacttcaaacacattatcctttttcaagcaagataaaaagtgcgtagcaagacttcttctc |
1815735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 68 - 341
Target Start/End: Complemental strand, 1857583 - 1857310
Alignment:
| Q |
68 |
atgatgattcatgaagcaagtagtgactctcctctacatttatgtctgcattgatccaagagtgcttatccattaacctcattccctccaattccatagc |
167 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| ||| | ||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
1857583 |
atgatgattcatgaagcaagtacctactctcctctacatttgagtcatctttgatccaagagtgcttattcattaacctcattccctccaattccatagc |
1857484 |
T |
|
| Q |
168 |
cacttccttcatgcttggtctttcttcccctctaagtctcaaacagtttgctgcaagaacagccacctccttgatctcttgtttgttttcttcattccac |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1857483 |
cacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctccttgatctcttgtttgttttcttcattccac |
1857384 |
T |
|
| Q |
268 |
aaaccatcttgaataacttcaaacacattatcctttttcaagcaagacagaaagtgcatagcaagacttcttct |
341 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
1857383 |
aaaccatcttgaataacttcaaatacattatcctttttcaagcaagatagaaaatgcatagcaagacttcttct |
1857310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 68 - 341
Target Start/End: Complemental strand, 1869181 - 1868908
Alignment:
| Q |
68 |
atgatgattcatgaagcaagtagtgactctcctctacatttatgtctgcattgatccaagagtgcttatccattaacctcattccctccaattccatagc |
167 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
1869181 |
atgatgattcatgaagcaagaaccgactctcctctacatttgagtcatcattgatccaagagtgcttattcattaacctcattccctccaattccatagc |
1869082 |
T |
|
| Q |
168 |
cacttccttcatgcttggtctttcttcccctctaagtctcaaacagtttgctgcaagaacagccacctccttgatctcttgtttgttttcttcattccac |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1869081 |
cacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctccttgatctcttgtttgttttcttcattccac |
1868982 |
T |
|
| Q |
268 |
aaaccatcttgaataacttcaaacacattatcctttttcaagcaagacagaaagtgcatagcaagacttcttct |
341 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||| ||||| || || ||||| |||||||||||||| |
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|
| T |
1868981 |
aaaccatcttgaataacttcaaatacattatcttttttcaatcaagatagtaaatgcattgcaagacttcttct |
1868908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 68 - 342
Target Start/End: Complemental strand, 1843572 - 1843298
Alignment:
| Q |
68 |
atgatgattcatgaagcaagtagtgactctcctctacatttatgtctgcattgatccaagagtgcttatccattaacctcattccctccaattccatagc |
167 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| ||| | ||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
1843572 |
atgatgattcatgaagcaagtacctactctcctctacatttgagtcatctttgatccaagagtgcttattcattaacctcattccctccaattccatagc |
1843473 |
T |
|
| Q |
168 |
cacttccttcatgcttggtctttcttcccctctaagtctcaaacagtttgctgcaagaacagccacctccttgatctcttgtttgttttcttcattccac |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1843472 |
cacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctccttgatctcttgtttgttttcttcattccac |
1843373 |
T |
|
| Q |
268 |
aaaccatcttgaataacttcaaacacattatcctttttcaagcaagacagaaagtgcatagcaagacttcttctc |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| ||||| || || | ||| ||||||||||||||| |
|
|
| T |
1843372 |
aaaccatcttgaataacttcaaacacattatcttttttcaatcaagatagtaaattcattgcaagacttcttctc |
1843298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 136 - 335
Target Start/End: Original strand, 9161351 - 9161550
Alignment:
| Q |
136 |
tccattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacagtttgctgcaagaacagccacct |
235 |
Q |
| |
|
||||||||||| || || ||||| ||||| ||||||||||||||||| || ||||| |||||||| ||||||||||| |||||||||||| ||| |||| |
|
|
| T |
9161351 |
tccattaaccttataccatccaactccattgccacttccttcatgctaggcctttcatcccctcttagtctcaaacaccttgctgcaagaatagcaacct |
9161450 |
T |
|
| Q |
236 |
ccttgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattatcctttttcaagcaagacagaaagtgcatagcaagact |
335 |
Q |
| |
|
|||| ||||| | |||||||| ||||| | | |||| |||||||| ||||||| | |||| | ||| || ||||||| |||||||||||||||||| |
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|
| T |
9161451 |
ccttaatctcctccttgttttcatcatttaaaataccaacttgaatagcttcaaaaattctatcttgttttaaacaagacaaaaagtgcatagcaagact |
9161550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 130 - 335
Target Start/End: Original strand, 9170171 - 9170376
Alignment:
| Q |
130 |
tgcttatccattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacagtttgctgcaagaacag |
229 |
Q |
| |
|
||||| ||||||||||| || || ||||| ||||| |||||||||||||| | |||||||| |||||||||||||| ||||| ||| ||||||| || |
|
|
| T |
9170171 |
tgcttctccattaaccttatgccatccaactccattgccacttccttcatacaaggtctttcatcccctctaagtcttaaacaccttgaagcaagaatag |
9170270 |
T |
|
| Q |
230 |
ccacctccttgatctcttgtttgttttcttcattccacaaa-ccatcttgaataacttcaaacacattatcctttttcaagcaagacagaaagtgcatag |
328 |
Q |
| |
|
| |||||||| ||||||| ||||| || || || |||||| ||| |||||||| ||||||| | ||||| | ||| || ||||||| ||||||||||| |
|
|
| T |
9170271 |
caacctccttaatctctttcttgttatcatcgtt-cacaaatccaacttgaatagcttcaaaaaatttatcttgttttaaacaagacaaaaagtgcatag |
9170369 |
T |
|
| Q |
329 |
caagact |
335 |
Q |
| |
|
||||||| |
|
|
| T |
9170370 |
caagact |
9170376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 130 - 335
Target Start/End: Original strand, 9199738 - 9199943
Alignment:
| Q |
130 |
tgcttatccattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacagtttgctgcaagaacag |
229 |
Q |
| |
|
||||| ||||||||||| || || ||||| |||||||| |||||| |||| || |||||||| || ||||||||||| ||||| |||| ||||||| || |
|
|
| T |
9199738 |
tgcttctccattaaccttataccatccaactccatagctacttccctcatactaggtctttcatcacctctaagtcttaaacaccttgcagcaagaatag |
9199837 |
T |
|
| Q |
230 |
ccacctccttgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattatcctttttcaagcaagacagaaagtgcatagc |
329 |
Q |
| |
|
| |||||||| ||||||| |||||||| |||| | | | ||| |||||||| | ||||| | ||||| | ||| || ||||||| |||||||||||| |
|
|
| T |
9199838 |
caacctccttaatctctttcttgttttcatcatccaaaattccaacttgaatagcatcaaaaagtttatcttgttttaaacaagacaaaaagtgcatagc |
9199937 |
T |
|
| Q |
330 |
aagact |
335 |
Q |
| |
|
|||||| |
|
|
| T |
9199938 |
aagact |
9199943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 140 - 335
Target Start/End: Complemental strand, 9119097 - 9118902
Alignment:
| Q |
140 |
ttaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacagtttgctgcaagaacagccacctcctt |
239 |
Q |
| |
|
||||||| || || ||||| |||||||| | ||||||||| || |||||||| || |||| |||||||||||| |||||||||||| ||| |||||||| |
|
|
| T |
9119097 |
ttaaccttataccatccaactccatagctatttccttcatactaggtctttcctctcctcgaagtctcaaacaccttgctgcaagaatagcaacctcctt |
9118998 |
T |
|
| Q |
240 |
gatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattatcctttttcaagcaagacagaaagtgcatagcaagact |
335 |
Q |
| |
|
||||||| ||||| || |||||| | | ||| |||||||| ||||||| | ||||| | ||| || ||||||| ||||||||||||||||| |
|
|
| T |
9118997 |
aatctcttccttgttatcatcattcaaaattccaacttgaatagcttcaaaaagtttatcttgttttaaacaagacaagaagtgcatagcaagact |
9118902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 130 - 335
Target Start/End: Original strand, 9218254 - 9218459
Alignment:
| Q |
130 |
tgcttatccattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacagtttgctgcaagaacag |
229 |
Q |
| |
|
||||| ||||||||||| || || ||||| |||||||| |||||| |||| || |||||||| || ||||||||||| ||||| |||| ||||||| || |
|
|
| T |
9218254 |
tgcttctccattaaccttatgccatccaactccatagctacttccctcatactaggtctttcatcacctctaagtcttaaacaccttgcagcaagaatag |
9218353 |
T |
|
| Q |
230 |
ccacctccttgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattatcctttttcaagcaagacagaaagtgcatagc |
329 |
Q |
| |
|
|||||||| ||||||| |||||||| ||||| | | ||| |||||||| | ||||| | ||||| | ||| || ||||||| |||||||||||| |
|
|
| T |
9218354 |
aaacctccttaatctctttcttgttttcatcattgaaaattccaacttgaatagcatcaaaaagtttatcttgttttaaacaagacaaaaagtgcatagc |
9218453 |
T |
|
| Q |
330 |
aagact |
335 |
Q |
| |
|
|||||| |
|
|
| T |
9218454 |
aagact |
9218459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 122 - 295
Target Start/End: Original strand, 9229131 - 9229304
Alignment:
| Q |
122 |
tccaagagtgcttatccattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacagtttgctgc |
221 |
Q |
| |
|
|||||| |||||| ||||||||||| | ||||| | |||||||||||||| |||||||| |||||||| || ||| |||||||||| || |||| || |
|
|
| T |
9229131 |
tccaagggtgcttctccattaaccttaacccctctagctccatagccacttctttcatgctaggtctttcctcgcctttaagtctcaagcaccttgcagc |
9229230 |
T |
|
| Q |
222 |
aagaacagccacctccttgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacat |
295 |
Q |
| |
|
||||| ||| || ||||| ||||| | ||||| || |||||| | | |||| |||||| ||||||| |||||| |
|
|
| T |
9229231 |
aagaatagcaacttccttaatctcctccttgttctcatcattcaaaataccaacttgaagaacttcagacacat |
9229304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 335
Target Start/End: Original strand, 9155439 - 9155638
Alignment:
| Q |
136 |
tccattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacagtttgctgcaagaacagccacct |
235 |
Q |
| |
|
||||||||||| || || ||||| |||||||| | ||||||||| || |||||||| || |||| ||||| ||||| |||||| |||| ||| |||| |
|
|
| T |
9155439 |
tccattaaccttataccatccaactccatagctatttccttcatactaggtctttcctcacctcgaagtcgtaaacaccgtgctgccagaatagcaacct |
9155538 |
T |
|
| Q |
236 |
ccttgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattatcctttttcaagcaagacagaaagtgcatagcaagact |
335 |
Q |
| |
|
| || ||||| | |||||||| ||||| | | |||| |||||||| ||||||| | |||| | ||| || ||||||| ||||||||| |||||||| |
|
|
| T |
9155539 |
ctttaatctcctccttgttttcatcatttaagataccaacttgaatagcttcaaaaattctatcttgttttaaacaagacaaaaagtgcattgcaagact |
9155638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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