View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6536_low_8 (Length: 336)

Name: NF6536_low_8
Description: NF6536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6536_low_8
NF6536_low_8
[»] chr2 (1 HSPs)
chr2 (22-326)||(2836202-2836495)


Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 22 - 326
Target Start/End: Complemental strand, 2836495 - 2836202
Alignment:
Q  22 atatggacgaaaatagttgcttaccttgcacaatctacatggtttgtacacattagaactagccttgtttaataccataaaaaatctttacaggaaaagt 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2836495 atatggacgaaaatagttgcttaccttgcacaatctacatggtttgtacacattagaactagccttgtttaataccataaaaaatctttacaggaaaagt 2836396  T
Q  122 ttttactaattaattctagagattgtaatcattcatacaagtaaaagtgtagggaacaaatgtttaaaattgttcaatcgcaaaggtcatatatgagaaa 221  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |    
T  2836395 ttgtactaattaattctagagattgtaatcattcatacaagtaaaagtgtagggaacaaatgtttaaaattgttcaatcgcaaaggtc-----------a 2836307  T
Q  222 ctaattgaaccagttttaaacatttcagtttctcttctctgacctgtatgatcgaacaatttagaatggatatttgtgtatgtttagaatgaatctttgc 321  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2836306 ctaattgaaccagttttaaacatttcagtttctcttctctgacctgtatgatcgaacaatttagaatggatattggtgtatgtttagaatgaatctttgc 2836207  T

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