View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6537_high_15 (Length: 277)
Name: NF6537_high_15
Description: NF6537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6537_high_15 |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: scaffold0189 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 266
Target Start/End: Complemental strand, 25505 - 25257
Alignment:
| Q |
18 |
ccaccattagtttgattcataatggaagccgtttaggtgtactgaggatgcatatgtatcctcaattgaaaatttaattcataatctatatttatcttct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25505 |
ccaccattagtttgattcataatggaagccgtttaggtgtactgaggatgcatatgtatcctcaattgaaaatttaattcataatctatatttatcttct |
25406 |
T |
|
| Q |
118 |
atttatcattatcctaatatttctcgtaacatatatgatatcgaatatgtgaacagaagtcttaaagtgctgaaccaaaaaacttgcataagattaattg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
25405 |
atttatcattatcctaatatttctcgtaacatatatgatatcgaatatgtgaacagaagtcttaaagtgctgaaccaaaaaacttgaataagattaattg |
25306 |
T |
|
| Q |
218 |
tgcaagttacatatataacttacctcgatgaggctttaagttgcttcat |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25305 |
tgcaagttacatatataacttacctcgatgaggctttaagttgcttcat |
25257 |
T |
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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 158
Target Start/End: Original strand, 6927517 - 6927641
Alignment:
| Q |
35 |
cataatggaagccgtttaggtgtactgaggatgcatatgtatcctcaattgaaaatttaattcataatctatatttatcttctat-ttatcattatccta |
133 |
Q |
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||||||||||||| ||| || || | ||||| ||||||||||||| ||||||| |||||| | |||||| ||||||||||||| ||||||||||| || |
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| T |
6927517 |
cataatggaagccatttcagtatattaaggatacatatgtatcctcgattgaaagattaatttagaatctacatttatcttctatattatcattatcata |
6927616 |
T |
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| Q |
134 |
atatttctcgtaacatatatgatat |
158 |
Q |
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|||||| | ||||||||| |||||| |
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| T |
6927617 |
atattttttgtaacatatctgatat |
6927641 |
T |
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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 158
Target Start/End: Original strand, 502774 - 502898
Alignment:
| Q |
35 |
cataatggaagccgtttaggtgtactgaggatgcatatgtatcctcaattgaaaatttaattcataatctatatttatcttctat-ttatcattatccta |
133 |
Q |
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||||||||||||| ||| || || | ||||| ||||||||||||| ||||||| |||||| | |||||| ||||||||||||| ||||||||||| || |
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| T |
502774 |
cataatggaagccatttcagtatattaaggatacatatgtatcctcgattgaaagattaatttagaatctacatttatcttctatattatcattatcata |
502873 |
T |
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| Q |
134 |
atatttctcgtaacatatatgatat |
158 |
Q |
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|||||| | ||||||||| |||||| |
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| T |
502874 |
atattttttgtaacatatctgatat |
502898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 158
Target Start/End: Original strand, 17254482 - 17254606
Alignment:
| Q |
35 |
cataatggaagccgtttaggtgtactgaggatgcatatgtatcctcaattgaaaatttaattcataatctatatttatcttctat-ttatcattatccta |
133 |
Q |
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||||||||||||| ||| || || | ||||| ||||||||||||| ||||||| |||||| | |||||| ||||||||||||| ||||||||||| || |
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| T |
17254482 |
cataatggaagccatttcagtatattaaggatacatatgtatcctcgattgaaagattaatttagaatctacatttatcttctatattatcattatcata |
17254581 |
T |
|
| Q |
134 |
atatttctcgtaacatatatgatat |
158 |
Q |
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|||||| | ||||||||| |||||| |
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| T |
17254582 |
atattttttgtaacatatctgatat |
17254606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 158
Target Start/End: Complemental strand, 20374657 - 20374533
Alignment:
| Q |
35 |
cataatggaagccgtttaggtgtactgaggatgcatatgtatcctcaattgaaaatttaattcataatctatatttatcttctat-ttatcattatccta |
133 |
Q |
| |
|
||||||||||||| ||| || || | ||||| ||||||||||||| ||||||| |||||| ||||||| ||||||||||||| ||||||||||| || |
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| T |
20374657 |
cataatggaagccatttcagtatattaaggatacatatgtatcctcgattgaaagattaatttataatctgcatttatcttctatattatcattatcata |
20374558 |
T |
|
| Q |
134 |
atatttctcgtaacatatatgatat |
158 |
Q |
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|||||| | ||||||||| |||||| |
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|
| T |
20374557 |
atattttttgtaacatatttgatat |
20374533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 158
Target Start/End: Original strand, 14539310 - 14539407
Alignment:
| Q |
62 |
aggatgcatatgtatcctcaattgaaaatttaattcataatctatatttatcttctat-ttatcattatcctaatatttctcgtaacatatatgatat |
158 |
Q |
| |
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||||| ||||||||||||| ||||||| |||||| | |||||| ||||||||||||| ||||||||||| |||||||| | ||||||||| |||||| |
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| T |
14539310 |
aggatacatatgtatcctcgattgaaagattaatttagaatctacatttatcttctatattatcattatcataatattttttgtaacatatctgatat |
14539407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 158
Target Start/End: Original strand, 20855518 - 20855642
Alignment:
| Q |
35 |
cataatggaagccgtttaggtgtactgaggatgcatatgtatcctcaattgaaaatttaattcataatctatatttatcttctat-ttatcattatccta |
133 |
Q |
| |
|
||||||||||||| ||| || || | ||||| ||||||||||||| ||||||| |||||| | |||||| ||||||||||||| ||||||||||| || |
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| T |
20855518 |
cataatggaagccatttcagtatattaaggatacatatgtatcctcgattgaaagattaatttagaatctacatttatcttctatattatcattatcata |
20855617 |
T |
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| Q |
134 |
atatttctcgtaacatatatgatat |
158 |
Q |
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|||| | | ||||||||| |||||| |
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| T |
20855618 |
atatcttttgtaacatatctgatat |
20855642 |
T |
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