View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6537_high_20 (Length: 250)
Name: NF6537_high_20
Description: NF6537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6537_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 52369423 - 52369646
Alignment:
| Q |
1 |
ataaatataatgtcccacaaatctgcacaaaattatatatttataaattagcagccatgccatatagtagttgaatatttattatattggtcaaaaccaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52369423 |
ataaatataatgtcccacaaatctgcacaaaattatatatttataaattagcagccatgccatatagtagttgaatatttattatattggtcaaaaccaa |
52369522 |
T |
|
| Q |
101 |
ataattgcattcatttgttcaacaaattatgatatctgtcatcatcgtatagtaaagtttcatagttagcctccaataagtgtactcaattaactttg-- |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52369523 |
ataattgcattcatttgttcaacaaattatgatatctgtcatcatcgtatagtaaagtttcatagttagcctccaataagtgtactcaattaactttgaa |
52369622 |
T |
|
| Q |
199 |
aaactagttagttatgtatttagt |
222 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
52369623 |
aaactagttagttatgtatttagt |
52369646 |
T |
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