View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6537_low_1 (Length: 934)
Name: NF6537_low_1
Description: NF6537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6537_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 444; Significance: 0; HSPs: 20)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 441 - 924
Target Start/End: Original strand, 38456248 - 38456731
Alignment:
| Q |
441 |
gttgatcatgtcattaatttgtattcagttaccgggaagaagcgataatgacataaagaacttttggtatgcgagcaaaagaaaacttgaaaagcgtggc |
540 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||| ||| |
|
|
| T |
38456248 |
gttgatcatgtcattaatttgtattcagttaccgggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaaagctcggc |
38456347 |
T |
|
| Q |
541 |
ttgtcaaccttccccgacaacatggaacctgatcctgagttgaatagtagccaaaaagttgaggattcacaagaagatgaatttaatataccacaattga |
640 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38456348 |
ttgtcacccttccccgacaacatggaaccggatcataagttgaatagtagccaacaagttgaggattcacaagaagatgaatttaatataccacaattga |
38456447 |
T |
|
| Q |
641 |
aatttagaaaatatccatcaatttttgatgagataaatgaaaaacttttagatgttccaaacatgttctacaataatgtgggaagtacttcaacattgat |
740 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38456448 |
aatttagaaaatatccatcaatttttgatgagataaatgaaaaacttttagatgttccaaacatgttctacaataatgtgggaagtacttcaacattgat |
38456547 |
T |
|
| Q |
741 |
tgataggtgagtagattatgtaattccattttcttttatatgttaaaattgtttatatgagtgtgttaaatttacagttactttcatcaatttcaggggt |
840 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38456548 |
tgataggtgagtagattatgtaattccattttcttttatatgttaaaattgtttatatgagtgtgttaaatttacagttactttcatcaatttcaggggt |
38456647 |
T |
|
| Q |
841 |
agcagcattattggaacttctcatattcatatacctatagctctaccctcaccatgttcataccttccacttccttcacctatg |
924 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38456648 |
agcagcattattggaacttctcatattcatatacctatagctctaccctcaccatgttcataccttccacttccttcacctatg |
38456731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 441 - 924
Target Start/End: Original strand, 38180888 - 38181370
Alignment:
| Q |
441 |
gttgatcatgtcattaatttgtattcagttaccgggaagaagcgataatgacataaagaacttttggtatgcgagcaaaagaaaacttgaaaagcgtggc |
540 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||| ||| |
|
|
| T |
38180888 |
gttgatcatgtcattaatttgtattcagttaccgggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaaagctcggc |
38180987 |
T |
|
| Q |
541 |
ttgtcaaccttccccgacaacatggaacctgatcctgagttgaatagtagccaaaaagttgaggattcacaagaagatgaatttaatataccacaattga |
640 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38180988 |
ttgtcacccttccccgacaacatggaaccggatcataagttgaatagtagccaacaagttgaggattcacaagaagatgaatttaatataccacaattga |
38181087 |
T |
|
| Q |
641 |
aatttagaaaatatccatcaatttttgatgagataaatgaaaaacttttagatgttccaaacatgttctacaataatgtgggaagtacttcaacattgat |
740 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38181088 |
aatttagaaaatatccatcaatttttgatgagataaatgaaaaacttttagatgttccaaacatgttctacaataatgtgggaagtacttcaacattgat |
38181187 |
T |
|
| Q |
741 |
tgataggtgagtagattatgtaattccattttcttttatatgttaaaattgtttatatgagtgtgttaaatttacagttactttcatcaatttcaggggt |
840 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| | |
|
|
| T |
38181188 |
tgataggtgagtagattatgtaattccattttcttttatatgttaaaattgtttatatgag-gtgttatatttacagttactttcatcaatttcagggtt |
38181286 |
T |
|
| Q |
841 |
agcagcattattggaacttctcatattcatatacctatagctctaccctcaccatgttcataccttccacttccttcacctatg |
924 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38181287 |
agcagcattattggaacttctcatattcatatacctatagctctaccctcaccatgttcataccttccacttccttcacctatg |
38181370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 441 - 924
Target Start/End: Complemental strand, 38190243 - 38189761
Alignment:
| Q |
441 |
gttgatcatgtcattaatttgtattcagttaccgggaagaagcgataatgacataaagaacttttggtatgcgagcaaaagaaaacttgaaaagcgtggc |
540 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||| ||| |
|
|
| T |
38190243 |
gttgatcatgtcattaatttgtattcagttaccgggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaaagctcggc |
38190144 |
T |
|
| Q |
541 |
ttgtcaaccttccccgacaacatggaacctgatcctgagttgaatagtagccaaaaagttgaggattcacaagaagatgaatttaatataccacaattga |
640 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38190143 |
ttgtcacccttccccgacaacatggaaccggatcataagttgaatagtagccaacaagttgaggattcacaagaagatgaatttaatataccacaattga |
38190044 |
T |
|
| Q |
641 |
aatttagaaaatatccatcaatttttgatgagataaatgaaaaacttttagatgttccaaacatgttctacaataatgtgggaagtacttcaacattgat |
740 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38190043 |
aatttagaaaatatccatcaatttttgatgagataaatgaaaaacttttagatgttccaaacatgttctacaataatgtgggaagtacttcaacattgat |
38189944 |
T |
|
| Q |
741 |
tgataggtgagtagattatgtaattccattttcttttatatgttaaaattgtttatatgagtgtgttaaatttacagttactttcatcaatttcaggggt |
840 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| | |
|
|
| T |
38189943 |
tgataggtgagtagattatgtaattccattttcttttatatgttaaaattgtttatatgag-gtgttatatttacagttactttcatcaatttcagggtt |
38189845 |
T |
|
| Q |
841 |
agcagcattattggaacttctcatattcatatacctatagctctaccctcaccatgttcataccttccacttccttcacctatg |
924 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38189844 |
agcagcattattggaacttctcatattcatatacctatagctctaccctcaccatgttcataccttccacttccttcacctatg |
38189761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 441 - 924
Target Start/End: Original strand, 38208112 - 38208594
Alignment:
| Q |
441 |
gttgatcatgtcattaatttgtattcagttaccgggaagaagcgataatgacataaagaacttttggtatgcgagcaaaagaaaacttgaaaagcgtggc |
540 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||| ||| |
|
|
| T |
38208112 |
gttgatcatgtcattaatttgtattcagttaccgggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaaagctcggc |
38208211 |
T |
|
| Q |
541 |
ttgtcaaccttccccgacaacatggaacctgatcctgagttgaatagtagccaaaaagttgaggattcacaagaagatgaatttaatataccacaattga |
640 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38208212 |
ttgtcacccttccccgacaacatggaaccggatcataagttgaatagtagccaacaagttgaggattcacaagaagatgaatttaatataccacaattga |
38208311 |
T |
|
| Q |
641 |
aatttagaaaatatccatcaatttttgatgagataaatgaaaaacttttagatgttccaaacatgttctacaataatgtgggaagtacttcaacattgat |
740 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38208312 |
aatttagaaaatatccatcaatttttgatgagataaatgaaaaacttttagatgttccaaacatgttctacaataatgtgggaagtacttcaacattgat |
38208411 |
T |
|
| Q |
741 |
tgataggtgagtagattatgtaattccattttcttttatatgttaaaattgtttatatgagtgtgttaaatttacagttactttcatcaatttcaggggt |
840 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| | |
|
|
| T |
38208412 |
tgataggtgagtagattatgtaattccattttcttttatatgttaaaattgtttatatgag-gtgttatatttacagttactttcatcaatttcagggtt |
38208510 |
T |
|
| Q |
841 |
agcagcattattggaacttctcatattcatatacctatagctctaccctcaccatgttcataccttccacttccttcacctatg |
924 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38208511 |
agcagcattattggaacttctcatattcatatacctatagctctaccctcaccatgttcataccttccacttccttcacctatg |
38208594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 441 - 924
Target Start/End: Complemental strand, 38217468 - 38216986
Alignment:
| Q |
441 |
gttgatcatgtcattaatttgtattcagttaccgggaagaagcgataatgacataaagaacttttggtatgcgagcaaaagaaaacttgaaaagcgtggc |
540 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||| ||| |
|
|
| T |
38217468 |
gttgatcatgtcattaatttgtattcagttaccgggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaaagctcggc |
38217369 |
T |
|
| Q |
541 |
ttgtcaaccttccccgacaacatggaacctgatcctgagttgaatagtagccaaaaagttgaggattcacaagaagatgaatttaatataccacaattga |
640 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38217368 |
ttgtcacccttccccgacaacatggaaccggatcataagttgaatagtagccaacaagttgaggattcacaagaagatgaatttaatataccacaattga |
38217269 |
T |
|
| Q |
641 |
aatttagaaaatatccatcaatttttgatgagataaatgaaaaacttttagatgttccaaacatgttctacaataatgtgggaagtacttcaacattgat |
740 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38217268 |
aatttagaaaatatccatcaatttttgatgagataaatgaaaaacttttagatgttccaaacatgttctacaataatgtgggaagtacttcaacattgat |
38217169 |
T |
|
| Q |
741 |
tgataggtgagtagattatgtaattccattttcttttatatgttaaaattgtttatatgagtgtgttaaatttacagttactttcatcaatttcaggggt |
840 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| | |
|
|
| T |
38217168 |
tgataggtgagtagattatgtaattccattttcttttatatgttaaaattgtttatatgag-gtgttatatttacagttactttcatcaatttcagggtt |
38217070 |
T |
|
| Q |
841 |
agcagcattattggaacttctcatattcatatacctatagctctaccctcaccatgttcataccttccacttccttcacctatg |
924 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38217069 |
agcagcattattggaacttctcatattcatatacctatagctctaccctcaccatgttcataccttccacttccttcacctatg |
38216986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 294; E-Value: 1e-164
Query Start/End: Original strand, 465 - 910
Target Start/End: Complemental strand, 26033324 - 26032886
Alignment:
| Q |
465 |
tcagttaccgggaagaagcgataatgacataaagaacttttggtatgcgagcaaaagaaaacttgaaaagcgtggcttgtcaaccttccccgacaacatg |
564 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| | ||||| |||||||||||||||| ||||||||||||| ||||||| ||||||||| |
|
|
| T |
26033324 |
tcagttaccgggaagaagcgataatgacatcaagaacttttggaacgcgagaaaaagaaaacttgaaaggcgtggcttgtcacccttccctgacaacatg |
26033225 |
T |
|
| Q |
565 |
gaacctgatcctgagttgaatagtagccaaaaagttgaggattcacaagaagatgaatttaatataccacaattgaaatttagaaaatatccatcaattt |
664 |
Q |
| |
|
|||| ||| |||| |||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26033224 |
gaactggatgatgagctgaatagtagccaacaaattgaggattcacaagaagatgaatttcatataccacaattgaaatttagaaaatatccatcaattt |
26033125 |
T |
|
| Q |
665 |
ttgatgagataaatgaaaaacttttagatgttccaaacatgttctacaataa---tgtgggaagtacttcaacattgattgataggtgagtagattatgt |
761 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26033124 |
ttgatgagataaatgaaaaacttttagatgtcccaaacatgttctacaataatattgtgggaagtacttcaacattgattgataggtgagtagattatgt |
26033025 |
T |
|
| Q |
762 |
aattccattttcttttatatgttaaaattgtttatatgagtgtgttaaatttacagttactttcatcaatttcaggggtagcagcattattggaacttct |
861 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||| |||||||||| | ||||||||||||||||| |
|
|
| T |
26033024 |
aattccattttcttttatatgttaaaattgtttatacgag-gtgttaaatttactgttactttcattaatttcaggg---gaagcattattggaacttc- |
26032930 |
T |
|
| Q |
862 |
catattcatatacctatagctctaccctcaccatgttcataccttccac |
910 |
Q |
| |
|
| |||||||||| |||| |||| ||||||||||||||||||||| |
|
|
| T |
26032929 |
-----ttatatacctatggctccacccccaccatgttcataccttccac |
26032886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 120 - 384
Target Start/End: Original strand, 38180544 - 38180808
Alignment:
| Q |
120 |
gaccgatactaaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaccatggaaccagaaattggaacgaggtatcaaaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38180544 |
gaccgatactaaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaacatggaaccagaaattggaacgaggtatcaaaa |
38180643 |
T |
|
| Q |
220 |
aatgctgggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaaa |
319 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38180644 |
aatgcggggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaat |
38180743 |
T |
|
| Q |
320 |
ctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaagctggctcatgaggta |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38180744 |
ctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaagctggctcatgaggta |
38180808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 120 - 384
Target Start/End: Complemental strand, 38190587 - 38190323
Alignment:
| Q |
120 |
gaccgatactaaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaccatggaaccagaaattggaacgaggtatcaaaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38190587 |
gaccgatactaaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaacatggaaccagaaattggaacgaggtatcaaaa |
38190488 |
T |
|
| Q |
220 |
aatgctgggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaaa |
319 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38190487 |
aatgcggggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaat |
38190388 |
T |
|
| Q |
320 |
ctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaagctggctcatgaggta |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38190387 |
ctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaagctggctcatgaggta |
38190323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 120 - 384
Target Start/End: Original strand, 38207768 - 38208032
Alignment:
| Q |
120 |
gaccgatactaaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaccatggaaccagaaattggaacgaggtatcaaaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38207768 |
gaccgatactaaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaacatggaaccagaaattggaacgaggtatcaaaa |
38207867 |
T |
|
| Q |
220 |
aatgctgggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaaa |
319 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38207868 |
aatgcggggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaat |
38207967 |
T |
|
| Q |
320 |
ctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaagctggctcatgaggta |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38207968 |
ctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaagctggctcatgaggta |
38208032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 120 - 384
Target Start/End: Complemental strand, 38217812 - 38217548
Alignment:
| Q |
120 |
gaccgatactaaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaccatggaaccagaaattggaacgaggtatcaaaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38217812 |
gaccgatactaaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaacatggaaccagaaattggaacgaggtatcaaaa |
38217713 |
T |
|
| Q |
220 |
aatgctgggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaaa |
319 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38217712 |
aatgcggggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaat |
38217613 |
T |
|
| Q |
320 |
ctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaagctggctcatgaggta |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38217612 |
ctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaagctggctcatgaggta |
38217548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 120 - 384
Target Start/End: Original strand, 38455904 - 38456168
Alignment:
| Q |
120 |
gaccgatactaaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaccatggaaccagaaattggaacgaggtatcaaaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38455904 |
gaccgatactaaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaacatggaaccagaaattggaacgaggtatcaaaa |
38456003 |
T |
|
| Q |
220 |
aatgctgggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaaa |
319 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38456004 |
aatgcggggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaat |
38456103 |
T |
|
| Q |
320 |
ctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaagctggctcatgaggta |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38456104 |
ctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaagctggctcatgaggta |
38456168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 123 - 384
Target Start/End: Complemental strand, 26033709 - 26033448
Alignment:
| Q |
123 |
cgatactaaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaccatggaaccagaaattggaacgaggtatcaaaaaat |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
26033709 |
cgatactaaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaccatggaaccagaaattggaacgaggtatcgaaaaat |
26033610 |
T |
|
| Q |
223 |
gctgggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaaacta |
322 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
26033609 |
gccgggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctgcaaccagatgtgaaaaagggtccatttagtgaagaagaagaaacaa |
26033510 |
T |
|
| Q |
323 |
aagtttttgagttctatataaagtatggtgaattcaaatggtctaagctggctcatgaggta |
384 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
26033509 |
aagtttttgtgttctataaaaagtatggtgaattcaaatggtctaagctggctgaggaggta |
26033448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 123 - 368
Target Start/End: Original strand, 38447013 - 38447258
Alignment:
| Q |
123 |
cgatactaaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaccatggaaccagaaattggaacgaggtatcaaaaaat |
222 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| || |
|
|
| T |
38447013 |
cgatactaaaaaaggaaaatggtcaaaagaagaggatgaaatattaaaagcatatgtggaaaaacatggaaccagaaattgggacgaggtatcaaagaac |
38447112 |
T |
|
| Q |
223 |
gctgggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaaacta |
322 |
Q |
| |
|
| || ||| || | ||| | |||||| ||| | |||||||||||| ||||| ||| | ||| |||||||||||||||||| |||||||| ||| || |
|
|
| T |
38447113 |
acaggacttgcacacttcggaagaagttgccgttttagatggtataataacctaagacctggtgtaaaaaagggtccatttagtaaagaagaagaaaata |
38447212 |
T |
|
| Q |
323 |
aagtttttgagttctatataaagtatggtgaattcaaatggtctaa |
368 |
Q |
| |
|
|||| ||| |||| || |||| ||||| ||||||||||||||| |
|
|
| T |
38447213 |
aagtctttcagttacgtaagaagtttggtggattcaaatggtctaa |
38447258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 466 - 585
Target Start/End: Original strand, 38447447 - 38447566
Alignment:
| Q |
466 |
cagttaccgggaagaagcgataatgacataaagaacttttggtatgcgagcaaaagaaaacttgaaaagcgtggcttgtcaaccttccccgacaacatgg |
565 |
Q |
| |
|
||||| || ||||||| |||||||||||| |||||||||||| ||||||| || ||||||| | ||||| ||||||||||| ||||||| |||||||||| |
|
|
| T |
38447447 |
cagttgcctggaagaaccgataatgacatcaagaacttttggaatgcgagaaagagaaaacataaaaagtgtggcttgtcacccttccctgacaacatgg |
38447546 |
T |
|
| Q |
566 |
aacctgatcctgagttgaat |
585 |
Q |
| |
|
||| ||| |||||||||| |
|
|
| T |
38447547 |
aactggatgatgagttgaat |
38447566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 83
Target Start/End: Original strand, 38180468 - 38180507
Alignment:
| Q |
44 |
ggttaaagttctctctgattcaattcccctagtacgtatt |
83 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
38180468 |
ggttaaagttctctctcattgaattcccctagtacgtatt |
38180507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 83
Target Start/End: Complemental strand, 38190663 - 38190624
Alignment:
| Q |
44 |
ggttaaagttctctctgattcaattcccctagtacgtatt |
83 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
38190663 |
ggttaaagttctctctcattgaattcccctagtacgtatt |
38190624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 83
Target Start/End: Original strand, 38207692 - 38207731
Alignment:
| Q |
44 |
ggttaaagttctctctgattcaattcccctagtacgtatt |
83 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
38207692 |
ggttaaagttctctctcattgaattcccctagtacgtatt |
38207731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 83
Target Start/End: Complemental strand, 38217888 - 38217849
Alignment:
| Q |
44 |
ggttaaagttctctctgattcaattcccctagtacgtatt |
83 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
38217888 |
ggttaaagttctctctcattgaattcccctagtacgtatt |
38217849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 83
Target Start/End: Original strand, 38455828 - 38455867
Alignment:
| Q |
44 |
ggttaaagttctctctgattcaattcccctagtacgtatt |
83 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
38455828 |
ggttaaagttctctctcattgaattcccctagtacgtatt |
38455867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 698 - 731
Target Start/End: Original strand, 38447655 - 38447688
Alignment:
| Q |
698 |
caaacatgttctacaataatgtgggaagtacttc |
731 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
38447655 |
caaatatgttctacaataatgtgggaagtacttc |
38447688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 155; Significance: 9e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 9e-82
Query Start/End: Original strand, 130 - 383
Target Start/End: Complemental strand, 53352110 - 53351852
Alignment:
| Q |
130 |
aaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaccatggaaccagaaattggaa-----cgaggtatcaaaaaatgc |
224 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
53352110 |
aaaaaaggaaaatggtcaaaagaagaggatgaaatgttaaaagcatatgtggaaaaacatggaaccagaaattggaatggaacgaggtatcaagaaatgc |
53352011 |
T |
|
| Q |
225 |
tgggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaaactaaa |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||| || |||||||||||||||||||| ||| |
|
|
| T |
53352010 |
ggggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcaccttcgaccagatgtgaagaaggggccgtttagtgaagaagaaaaaaccaaa |
53351911 |
T |
|
| Q |
325 |
gtttttgagttctatataaagtatggtgaattcaaatggtctaagctggctcatgaggt |
383 |
Q |
| |
|
|| ||| ||||| || || | |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
53351910 |
gtctttcggttctttaacaactttggtgaattcaaatggtctaagctggctcaagaggt |
53351852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 475 - 646
Target Start/End: Complemental strand, 53351429 - 53351249
Alignment:
| Q |
475 |
ggaagaagcgataatgacataaagaacttttggtatgcgagcaaaagaaaacttgaaaagcgtggcttgtcaaccttccccgacaacatggaacctgatc |
574 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||| |||| || ||||||||||||||||||||| ||||| |||| || ||||| ||||||| || |
|
|
| T |
53351429 |
ggaagaagcgataatgacatcaagaatttttggaatgcaagaaaaagaaaacttgaaaagcgt---atgtcaccctttcctgacaagatggaactgaatg |
53351333 |
T |
|
| Q |
575 |
ctgagttgaat------------agtagccaaaaagttgaggattcacaagaagatgaatttaatataccacaattgaaattta |
646 |
Q |
| |
|
|||||||||| | ||||||| ||||| ||||||||||||| ||||||||||||||||| ||| ||||||||| |
|
|
| T |
53351332 |
atgagttgaataaaagtggttcaaatagccaacaagttaaggattcacaagatgatgaatttaatataccgcaagtgaaattta |
53351249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 1e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 613 - 731
Target Start/End: Complemental strand, 6067860 - 6067743
Alignment:
| Q |
613 |
gaagatgaatttaatataccacaattgaaatttagaaaatatccatcaatttttgatgagataaatgaaaaacttttagatgttccaaacatgttctaca |
712 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
6067860 |
gaagatgaattta-tataccacaattgaaatttagaaaatatccataaattttttatgagataaatgaaacacttttagatgtcccaaacatgttctaca |
6067762 |
T |
|
| Q |
713 |
ataatgtgggaagtacttc |
731 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
6067761 |
ataacgtgggaagtacttc |
6067743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 4e-25; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 141 - 376
Target Start/End: Original strand, 38342328 - 38342563
Alignment:
| Q |
141 |
atggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaccatggaaccagaaattggaacgaggtatcaaaaaatgctgggcttatacgttgc |
240 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||| |||||||||| ||||||||||| || | || ||| || || |
|
|
| T |
38342328 |
atggtcaaaagaagaggatgaaatattaaaagcatatgttgaaaaacatggaaccggaaattggaaagaggtatcaaagaacacgggacttgcacactgt |
38342427 |
T |
|
| Q |
241 |
ggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaaactaaagtttttgagttctata |
340 |
Q |
| |
|
|| || ||||| ||| | |||||||||||| |||| ||| ||| | | ||||||||||||||| |||||||| || ||| | |||||||| | | |
|
|
| T |
38342428 |
ggaaacagttgccgttttagatggtataatactctacgacctgatttaagaaagggtccatttagcaaagaagaagaagaaaaattctttgagttatttt |
38342527 |
T |
|
| Q |
341 |
taaagtatggtgaattcaaatggtctaagctggctc |
376 |
Q |
| |
|
|||| |||||| ||||||||||||||| |||||| |
|
|
| T |
38342528 |
ctaagtttggtgagttcaaatggtctaagatggctc |
38342563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 141 - 376
Target Start/End: Original strand, 38446521 - 38446756
Alignment:
| Q |
141 |
atggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaccatggaaccagaaattggaacgaggtatcaaaaaatgctgggcttatacgttgc |
240 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||| |||||||||| ||||||||||| || | || ||| || || |
|
|
| T |
38446521 |
atggtcaaaagaagaggatgaaatattaaaagcatatgttgaaaaacatggaaccggaaattggaaagaggtatcaaagaacacgggacttgcacactgt |
38446620 |
T |
|
| Q |
241 |
ggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaaactaaagtttttgagttctata |
340 |
Q |
| |
|
|| || ||||| ||| | |||||||||||| |||| ||| ||| | | ||||||||||||||| |||||||| || ||| | |||||||| | | |
|
|
| T |
38446621 |
ggaaacagttgccgttttagatggtataatactctacgacctgatttaagaaagggtccatttagcaaagaagaagaagaaaaattctttgagttatttt |
38446720 |
T |
|
| Q |
341 |
taaagtatggtgaattcaaatggtctaagctggctc |
376 |
Q |
| |
|
|||| |||||| ||||||||||||||| |||||| |
|
|
| T |
38446721 |
ctaagtttggtgagttcaaatggtctaagatggctc |
38446756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 726 - 781
Target Start/End: Original strand, 38343008 - 38343063
Alignment:
| Q |
726 |
tacttcaacattgattgataggtgagtagattatgtaattccattttcttttatat |
781 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||| ||| ||||| |||||||||| |
|
|
| T |
38343008 |
tacttctacattgattgataggtgagttgattatgcaatgccattctcttttatat |
38343063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 726 - 781
Target Start/End: Original strand, 38447201 - 38447256
Alignment:
| Q |
726 |
tacttcaacattgattgataggtgagtagattatgtaattccattttcttttatat |
781 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||| ||| ||||| |||||||||| |
|
|
| T |
38447201 |
tacttctacattgattgataggtgagttgattatgcaatgccattctcttttatat |
38447256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 475 - 562
Target Start/End: Original strand, 38342739 - 38342826
Alignment:
| Q |
475 |
ggaagaagcgataatgacataaagaacttttggtatgcgagcaaaagaaaacttgaaaagcgtggcttgtcaaccttccccgacaaca |
562 |
Q |
| |
|
||||||| |||||||||||| |||||||||||| | || || |||||||||| | ||| | | |||||||| ||||||| ||||||| |
|
|
| T |
38342739 |
ggaagaaccgataatgacatcaagaacttttggaacgcaagaaaaagaaaacatcaaagacattgcttgtcacccttccctgacaaca |
38342826 |
T |
|
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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 475 - 562
Target Start/End: Original strand, 38446932 - 38447019
Alignment:
| Q |
475 |
ggaagaagcgataatgacataaagaacttttggtatgcgagcaaaagaaaacttgaaaagcgtggcttgtcaaccttccccgacaaca |
562 |
Q |
| |
|
||||||| |||||||||||| |||||||||||| | || || |||||||||| | ||| | | |||||||| ||||||| ||||||| |
|
|
| T |
38446932 |
ggaagaaccgataatgacatcaagaacttttggaacgcaagaaaaagaaaacatcaaagacattgcttgtcacccttccctgacaaca |
38447019 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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