View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6537_low_12 (Length: 353)
Name: NF6537_low_12
Description: NF6537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6537_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 7009426 - 7009090
Alignment:
| Q |
1 |
ccaattccatgtcgataactcggaaaaatcatgaacaccgcaccagaaaccaccccaataaccggtggtaacacctgcatgagaatcttctcagacgact |
100 |
Q |
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| T |
7009426 |
ccaattccatgtcgataactcggaaaaatcatgaacaccgcaccagaaaccaccccaataaccggtggtaacacctgcatgagaatcttctcagacgact |
7009327 |
T |
|
| Q |
101 |
caaatttcgggtaaaagcaatgcacaacattagtgtcaagcagtcccagcaccgcgaacacaaccaccgacaagaaagcatggacaaagtctccaaatct |
200 |
Q |
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| T |
7009326 |
caaatttcgggtaaaagcaatgcacaacattagtgtcaagcagtcccagcaccgcgaacacaatcaccgacaagaaagcatggacaaagtctccaaatct |
7009227 |
T |
|
| Q |
201 |
aagcttatatgccgacaaatcaactgaatctgatgctggagatggccagagaccattcgtggtaacaataccatagtgtctctggccatcgcttcctgtg |
300 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
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| T |
7009226 |
aagcttatatgccgacaaatcaactgaatctgatcccggagatggccagagaccattcatggtaacaataccatagtgtctctggccatcgcttccggtg |
7009127 |
T |
|
| Q |
301 |
taactgtcagtgaaggaagtaaaagcacagttgaaac |
337 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
7009126 |
taactgtcagtgaaggaagtaaaagcacagttgaaac |
7009090 |
T |
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