View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6537_low_13 (Length: 332)
Name: NF6537_low_13
Description: NF6537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6537_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 7009621 - 7009948
Alignment:
| Q |
1 |
agaattgtttgggtgtgtattataaacatcaagtgtcaatttggaattatcggtcatgtaatcagtcaaaacaatgagt--------tagaagttacaac |
92 |
Q |
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| T |
7009621 |
agaattgtttgggtgtgtattataaacatcaagtgtcaatttggaattatcggtcatgtaatcaatcaaaacaatgagtcaatgagttagaagttacaac |
7009720 |
T |
|
| Q |
93 |
aattagctgttnnnnnnnnnnnnnnngttataacagtcaacgagtcacttgtgaaatttattattgggtgaagaagcaaattaattattggaacagtaga |
192 |
Q |
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| T |
7009721 |
aattagctgttaaaaaaaaaaaa---gttacaacagtcaacgagtcccttgtgaaatttattattgggtgaagaagcaaattaattattggaacagtaga |
7009817 |
T |
|
| Q |
193 |
tgatgcctttaaatgttttcaattgtaacaatgtaacnnnnnnnnntgttttcaattgtagatgagtttgatatattcttccttaactctgattttgaga |
292 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7009818 |
tgatgcctttaaatgttttcaattgtaacaatgtaacaaaaaaatatgttttcaattgtagatgagtttgatatattcttccttaactctgattttgaga |
7009917 |
T |
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| Q |
293 |
tacaaataatctttgacattcacatattctt |
323 |
Q |
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||||||||||||||| |||||||||| |||| |
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| T |
7009918 |
tacaaataatctttgccattcacataatctt |
7009948 |
T |
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