View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6537_low_14 (Length: 329)
Name: NF6537_low_14
Description: NF6537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6537_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-169; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 10 - 309
Target Start/End: Complemental strand, 36149404 - 36149105
Alignment:
| Q |
10 |
agaagaacactctcctaatcaaggacaagaagtagcacacgtgaaggaagatgagactgatgcagagacaaaagaaaatgactctccaccaccattgcat |
109 |
Q |
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| T |
36149404 |
agaagaacactctcctaatcaaggacaagaagtagcacacgtgaaggaagatgagactgatgcagagacaaaagaaaatgactctccaccaccattgcat |
36149305 |
T |
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| Q |
110 |
gaagttgaagccattcttgaatacgaatttaagaacaaactattactagaagaggctttcactcatggtacttatggtgctgagaatggcttatcatatg |
209 |
Q |
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| T |
36149304 |
gaagttgaagccattcttgaatacgaatttaagaacaaactattactagaagaggctttcactcatggtacttatggtgctgagaatggcttatcatatg |
36149205 |
T |
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| Q |
210 |
aacgtttggaatatgtaggtgattcagttcttaacctaatgataacaaaggaacagtttcaagcatatccaaccctagcaccaggtcacttgacccgttt |
309 |
Q |
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| T |
36149204 |
aacgtttggaatatgtaggtgattcagttcttaacctaatgataacaaaggaacagtttcaagcatatccaaccctagcaccaggtcacttgacccgttt |
36149105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 105 - 309
Target Start/End: Complemental strand, 36083412 - 36083208
Alignment:
| Q |
105 |
tgcatgaagttgaagccattcttgaatacgaatttaagaacaaactattactagaagaggctttcactcatggtacttatggtgctgagaatggcttatc |
204 |
Q |
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| T |
36083412 |
tgcatgaagtggaagcaattctagaatacgaatttaagaacatactattgctagaagaggctttcactcactgtacttacggtgctgagaatggcttatc |
36083313 |
T |
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| Q |
205 |
atatgaacgtttggaatatgtaggtgattcagttcttaacctaatgataacaaaggaacagtttcaagcatatccaaccctagcaccaggtcacttgacc |
304 |
Q |
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| T |
36083312 |
ttatgagcgtttggaatacataggtgattcagttcttaacctaatgataacaacggaacaatttcatgcatatccaacgctggcaccaggtcacttgacc |
36083213 |
T |
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| Q |
305 |
cgttt |
309 |
Q |
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||||| |
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| T |
36083212 |
cgttt |
36083208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 36083504 - 36083456
Alignment:
| Q |
10 |
agaagaacactctcctaatcaaggacaagaagtagcacacgtgaaggaa |
58 |
Q |
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| T |
36083504 |
agaagaacactctccgaaacaaggacaagaagaagtacacatgaaggaa |
36083456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 36 - 174
Target Start/End: Original strand, 26527625 - 26527763
Alignment:
| Q |
36 |
aagaagtagcacacgtgaaggaagatgagactgatgcagagacaaaagaaaatgactctccaccaccattgcatgaagttgaagccattcttgaatacga |
135 |
Q |
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|||||| || |||| |||||||| |||||| |||||| |||||| |||||||||| |||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
26527625 |
aagaagaagaacacatgaaggaaaatgagaatgatgcggagacagaagaaaatgattctccaccaccaccgcatgaagtggaagccattcttgaatacga |
26527724 |
T |
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| Q |
136 |
atttaagaacaaactattactagaagaggctttcactca |
174 |
Q |
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||| ||||||||||||||||||||||||||||||||||| |
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| T |
26527725 |
attcaagaacaaactattactagaagaggctttcactca |
26527763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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