View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6537_low_15 (Length: 329)

Name: NF6537_low_15
Description: NF6537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6537_low_15
NF6537_low_15
[»] chr5 (18 HSPs)
chr5 (11-329)||(8529354-8529672)
chr5 (12-329)||(8535918-8536235)
chr5 (19-329)||(1599679-1599989)
chr5 (20-254)||(9074118-9074352)
chr5 (27-145)||(8547470-8547588)
chr5 (24-329)||(2856268-2856576)
chr5 (165-329)||(8637290-8637454)
chr5 (24-329)||(2873878-2874186)
chr5 (24-329)||(2904384-2904692)
chr5 (24-137)||(2844435-2844548)
chr5 (260-329)||(8641797-8641866)
chr5 (174-329)||(2844594-2844749)
chr5 (179-329)||(9003880-9004028)
chr5 (20-143)||(8644833-8644956)
chr5 (177-217)||(8644747-8644787)
chr5 (184-223)||(11354043-11354082)
chr5 (184-223)||(11373311-11373350)
chr5 (90-134)||(9004088-9004132)
[»] chr4 (1 HSPs)
chr4 (11-329)||(9443515-9443833)
[»] chr7 (2 HSPs)
chr7 (11-329)||(48361223-48361541)
chr7 (31-329)||(35780230-35780544)
[»] chr1 (2 HSPs)
chr1 (197-329)||(5131184-5131316)
chr1 (242-320)||(26324109-26324187)
[»] chr6 (1 HSPs)
chr6 (20-146)||(16716982-16717108)
[»] scaffold0627 (1 HSPs)
scaffold0627 (32-137)||(5293-5398)


Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 11 - 329
Target Start/End: Complemental strand, 8529672 - 8529354
Alignment:
Q  11 cagagatattgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8529672 cagagatattgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccaatagtgatctgcaacccagtc 8529573  T
Q  111 acgggggagttcataagacttcctgaatctactacaaatcgaactcgagtaagaatgcaaggtcaagctggttttggattccaacctaaaactaatgaat 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8529572 acgggggagttcataagacttcctgaatctactacaaatcgaactcgagtaagaatgcaaggtcaagctggttttggattccaacctaaaactaatgaat 8529473  T
Q  211 ataaggtaataagcgtgtggataagacatgttaaacatgccaatcagtgggtgtttgagcgtgtgatccttgagatacacactcttggaacattgtcatg 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||   || ||    
T  8529472 ataaggtaataagcgtgtggataagacatgttaaacatgccaatcagtgggtgtttgagcgtgtgatccttgagataaacacacttggaacaacatcctg 8529373  T
Q  311 gagaaatgttgaagtggat 329  Q
    |||||||||||||||||||    
T  8529372 gagaaatgttgaagtggat 8529354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 329
Target Start/End: Complemental strand, 8536235 - 8535918
Alignment:
Q  12 agagatattgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtca 111  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8536235 agagattttgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtca 8536136  T
Q  112 cgggggagttcataagacttcctgaatctactacaaatcgaactcgagtaagaatgcaaggtcaagctggttttggattccaacctaaaactaatgaata 211  Q
    | |||||||| ||||||||||||||||||| | |  ||| || ||| ||||||| || ||| |||||||||||||| |||||||||||||||||||||||    
T  8536135 ctggggagtttataagacttcctgaatctattgcggatcaaaatcgggtaagaaggctaggacaagctggttttggtttccaacctaaaactaatgaata 8536036  T
Q  212 taaggtaataagcgtgtggataagacatgttaaacatgccaatcagtgggtgtttgagcgtgtgatccttgagatacacactcttggaacattgtcatgg 311  Q
    |||||| |||| | ||||| | ||||||||||||| |||||||  ||||| |||||||||| ||| |||||||||| |||| ||||||||    || |||    
T  8536035 taaggtgataaacatgtgggtgagacatgttaaacgtgccaatgtgtgggagtttgagcgtttgacccttgagataaacacacttggaaccccatcctgg 8535936  T
Q  312 agaaatgttgaagtggat 329  Q
    ||||||||||||||||||    
T  8535935 agaaatgttgaagtggat 8535918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 19 - 329
Target Start/End: Original strand, 1599679 - 1599989
Alignment:
Q  19 ttgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacggggga 118  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||| |||||    
T  1599679 ttgataagtttaatattgtgaattcttgcaatggtttactttgtttgtctgacccatatttcggaaacccattagtgatctgcaacccaatcactgggga 1599778  T
Q  119 gttcataagacttcctgaatctactacaaatcgaactcgagtaagaatgcaaggtcaagctggttttggattccaacctaaaactaatgaatataaggta 218  Q
    ||||||||||||||||||||||||  | |||| |||||| ||| ||| |||||| | ||||| |||||| |||||||||||||||||||||||||||||     
T  1599779 gttcataagacttcctgaatctaccgcgaatcaaactcgggtaggaaggcaaggacgagctgcttttggtttccaacctaaaactaatgaatataaggtg 1599878  T
Q  219 ataagcgtgtggataagacatgttaaacatgccaatcagtgggtgtttgagcgtgtgatccttgagatacacactcttggaacattgtcatggagaaatg 318  Q
    |||| | || || | ||| ||||||||| |||||||  || || |||| ||  |||||||||||||||| |||| |||||||||   || ||||||||||    
T  1599879 ataaacatgagggtgagatatgttaaacgtgccaatgcgttggagtttaagattgtgatccttgagataaacacacttggaacaccatcctggagaaatg 1599978  T
Q  319 ttgaagtggat 329  Q
    |||||||||||    
T  1599979 ttgaagtggat 1599989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 20 - 254
Target Start/End: Original strand, 9074118 - 9074352
Alignment:
Q  20 tgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggag 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||   |||||||| | ||||||||||||||||||||| ||||||    
T  9074118 tgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgaaccaactaccggaaacccttcagtgatctgcaacccagtcacaggggag 9074217  T
Q  120 ttcataagacttcctgaatctactacaaatcgaactcgagtaagaatgcaaggtcaagctggttttggattccaacctaaaactaatgaatataaggtaa 219  Q
    |||||||||||||||||| |||| || ||||||||||| |||||||||  ||| |||| ||||||||||||||||||||| |||||||||||||||||||    
T  9074218 ttcataagacttcctgaagctaccacgaatcgaactcgggtaagaatggtaggacaagttggttttggattccaacctaatactaatgaatataaggtaa 9074317  T
Q  220 taagcgtgtggataagacatgttaaacatgccaat 254  Q
    ||||  ||||||||||||||| ||||| |||||||    
T  9074318 taagaatgtggataagacatggtaaacgtgccaat 9074352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 27 - 145
Target Start/End: Original strand, 8547470 - 8547588
Alignment:
Q  27 tttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggagttcataa 126  Q
    |||||||||||||||||||||| ||| || |||||||||||||| ||| ||   |||||||| |||||||||||||| ||| |||| |||||||||||||    
T  8547470 tttgatattgtgaattcttgcagtggcttgctttgtttgtctgaaccaactaccggaaaccctttagtgatctgcaatccaatcacaggggagttcataa 8547569  T
Q  127 gacttcctgaatctactac 145  Q
    |||||| |||| |||||||    
T  8547570 gacttcttgaagctactac 8547588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 329
Target Start/End: Original strand, 2856268 - 2856576
Alignment:
Q  24 aagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggagttca 123  Q
    |||||||  |||||||||||||||||||| || |||||||| |||||  ||||| | |||| ||| |||||||| ||||||||||| ||| |||| || |    
T  2856268 aagtttggcattgtgaattcttgcaatggcttgctttgtttatctgaaacatctatcggaagccctttagtgatttgcaacccagtaacgagggaattta 2856367  T
Q  124 taagacttcctgaatctactac-aaatcgaactcgagtaagaatgcaagg--tcaagctggttttggattccaacctaaaactaatgaatataaggtaat 220  Q
     || ||||||||||  |||||| |  ||  ||| |  ||| | |||  ||   |||||||||||||| |||||||| |||||||||||||||||||| ||    
T  2856368 caatacttcctgaacttactacgacttctgactggtttaacagtgctcgggtacaagctggttttggtttccaacccaaaactaatgaatataaggtgat 2856467  T
Q  221 aagcgtgtggataagacatgttaaacatgccaatcagtgggtgtttgagcgtgtgatccttgagatacacactcttggaacattgtcatggagaaatgtt 320  Q
     |   ||||||  | | |||||| ||  | |||||  | |||||||||||||||  | || ||||||||||| || |||||||  |||||||||||||||    
T  2856468 cataatgtggaacaaatatgttagacgagacaatcgtttggtgtttgagcgtgtagtgctcgagatacacacgctcggaacatcatcatggagaaatgtt 2856567  T
Q  321 gaagtggat 329  Q
    |||||||||    
T  2856568 gaagtggat 2856576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 165 - 329
Target Start/End: Complemental strand, 8637454 - 8637290
Alignment:
Q  165 atgcaaggtcaagctggttttggattccaacctaaaactaatgaatataaggtaataagcgtgtggataagacatgttaaacatgccaatcagtgggtgt 264  Q
    |||| ||| |||| ||||||||| ||||||||||||||||||||||||||||| |||||  | |||   ||  |||||||||  | |||||  |||||||    
T  8637454 atgcgaggacaagttggttttggtttccaacctaaaactaatgaatataaggtgataagaatatggggcagtgatgttaaacgaggcaatcgttgggtgt 8637355  T
Q  265 ttgagcgtgtgatccttgagatacacactcttggaacattgtcatggagaaatgttgaagtggat 329  Q
    |||| ||| || ||||||||||| | || |||||||||   ||||||||||||| ||||||||||    
T  8637354 ttgatcgtatggtccttgagatatatacacttggaacaccatcatggagaaatgctgaagtggat 8637290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 329
Target Start/End: Original strand, 2873878 - 2874186
Alignment:
Q  24 aagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggagttca 123  Q
    |||||||  |||||||||||||||||||| || |||||||| |||||  ||||| | |||| ||| |||||||| ||||||||||| ||| |||| ||||    
T  2873878 aagtttggcattgtgaattcttgcaatggcttgctttgtttatctgaaacatctatcggaagccctttagtgatttgcaacccagtaacgagggaattca 2873977  T
Q  124 taagacttcctgaatctactac-aaatcgaactcgagtaagaatgcaagg--tcaagctggttttggattccaacctaaaactaatgaatataaggtaat 220  Q
     || ||||||||||  |||||| |  ||  ||| |  ||| | |||  ||   |||||||||||| | |||||||| |||||||||||||||||||| ||    
T  2873978 caatacttcctgaacttactacgacttctgactggtttaacagtgctcgggtacaagctggttttagtttccaacccaaaactaatgaatataaggtgat 2874077  T
Q  221 aagcgtgtggataagacatgttaaacatgccaatcagtgggtgtttgagcgtgtgatccttgagatacacactcttggaacattgtcatggagaaatgtt 320  Q
     |   | ||||  | | |||||| ||  | |||||  | |||||||||||||||  | || ||||||||||| || ||||||   |||||||||||||||    
T  2874078 cataatatggaacaaatatgttagacgagacaatcgtttggtgtttgagcgtgtagtgctcgagatacacacgctcggaacaccatcatggagaaatgtt 2874177  T
Q  321 gaagtggat 329  Q
    |||||||||    
T  2874178 gaagtggat 2874186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 329
Target Start/End: Original strand, 2904384 - 2904692
Alignment:
Q  24 aagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggagttca 123  Q
    |||||||  |||||||||||||||||||| || |||||||| |||||  |||||   |||| ||| |||| ||| ||||||||||| ||| |||| ||||    
T  2904384 aagtttggcattgtgaattcttgcaatggcttgctttgtttatctgaaacatctaccggaagccctttagcgatttgcaacccagtaacgagggaattca 2904483  T
Q  124 taagacttcctgaatctactac-aaatcgaactcgagtaagaatgcaagg--tcaagctggttttggattccaacctaaaactaatgaatataaggtaat 220  Q
     || ||||||||||  |||||| |  ||  ||| |  ||| | |||  ||   |||||||||||||| |||||||| |||||||||||||||||||| ||    
T  2904484 caatacttcctgaacttactacgacttctgactggtttaacagtgctcgggtgcaagctggttttggtttccaacccaaaactaatgaatataaggtgat 2904583  T
Q  221 aagcgtgtggataagacatgttaaacatgccaatcagtgggtgtttgagcgtgtgatccttgagatacacactcttggaacattgtcatggagaaatgtt 320  Q
    ||   ||||||  | |||||||| ||  |||||  | | |||||| |||||| |  | |||||||||||||| || ||||||   |||||||||||| ||    
T  2904584 aataatgtggaataaacatgttagacgggccaacgatttggtgttcgagcgtctagtgcttgagatacacacgctcggaacaacatcatggagaaatctt 2904683  T
Q  321 gaagtggat 329  Q
    |||||||||    
T  2904684 gaagtggat 2904692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 24 - 137
Target Start/End: Original strand, 2844435 - 2844548
Alignment:
Q  24 aagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggagttca 123  Q
    |||||||  |||||||||||||||||||| || |||||||| |||||  ||||| | |||| ||| |||||||| ||||||||||| ||| |||| ||||    
T  2844435 aagtttggcattgtgaattcttgcaatggcttgctttgtttatctgaaacatctatcggaagccctttagtgatttgcaacccagtaacgagggaattca 2844534  T
Q  124 taagacttcctgaa 137  Q
     || ||||||||||    
T  2844535 caatacttcctgaa 2844548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 260 - 329
Target Start/End: Complemental strand, 8641866 - 8641797
Alignment:
Q  260 ggtgtttgagcgtgtgatccttgagatacacactcttggaacattgtcatggagaaatgttgaagtggat 329  Q
    |||||||||||||||||||||||||||| |||| |||||| ||   ||||||||||||||||||||||||    
T  8641866 ggtgtttgagcgtgtgatccttgagataaacacacttggagcaccatcatggagaaatgttgaagtggat 8641797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 329
Target Start/End: Original strand, 2844594 - 2844749
Alignment:
Q  174 caagctggttttggattccaacctaaaactaatgaatataaggtaataagcgtgtggataagacatgttaaacatgccaatcagtgggtgtttgagcgtg 273  Q
    |||||||||||||| |||||||| |||||||||||||||||||| || |   ||||||  | | |||||| ||    |||||  | ||||||||||||||    
T  2844594 caagctggttttggtttccaacccaaaactaatgaatataaggtgatcataatgtggaacaaatatgttagacgaaacaatcgtttggtgtttgagcgtg 2844693  T
Q  274 tgatccttgagatacacactcttggaacattgtcatggagaaatgttgaagtggat 329  Q
    |  | || ||||||||||| |||||||||   ||||||||||| ||||||||||||    
T  2844694 tagtgctcgagatacacacgcttggaacaccatcatggagaaaggttgaagtggat 2844749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 179 - 329
Target Start/End: Complemental strand, 9004028 - 9003880
Alignment:
Q  179 tggttttggattccaacctaaaactaatgaatataaggtaataagcgtgtggataagacatgttaaacatgccaatcagtgggtgtttgagcgtgtgatc 278  Q
    ||||||||| |  ||||||||||||||||| |||||||| ||||   | ||||  |||||||||| |  || |||| | |  ||||||||||||| ||||    
T  9004028 tggttttggttatcaacctaaaactaatgattataaggtgataaaaatatggacgagacatgttagaggtgacaataactttgtgtttgagcgtgcgatc 9003929  T
Q  279 cttgagatacacactcttggaacattgtcatggagaaatgttgaagtggat 329  Q
    |||||||||||||  || ||||||   ||||||||||||||||||||||||    
T  9003928 cttgagatacaca--ctgggaacaccatcatggagaaatgttgaagtggat 9003880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 8644956 - 8644833
Alignment:
Q  20 tgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggag 119  Q
    ||||||||||| | ||||||||||||||||||| || |||||||||  | | |||| |   ||||  |||||||| || ||||| |||||||| ||||||    
T  8644956 tgataagtttggtgttgtgaattcttgcaatggcttgctttgtttgcgtcatccatttgaaggaagaccattagtaatttgcaatccagtcactggggag 8644857  T
Q  120 ttcataagacttcctgaatctact 143  Q
    || |||||||||||| || |||||    
T  8644856 tttataagacttcctaaagctact 8644833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 8644787 - 8644747
Alignment:
Q  177 gctggttttggattccaacctaaaactaatgaatataaggt 217  Q
    |||| |||||| |||||||||||||||||||||||||||||    
T  8644787 gctgcttttggcttccaacctaaaactaatgaatataaggt 8644747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 223
Target Start/End: Original strand, 11354043 - 11354082
Alignment:
Q  184 ttggattccaacctaaaactaatgaatataaggtaataag 223  Q
    |||| ||||||||||||||||||||||||||||| |||||    
T  11354043 ttggcttccaacctaaaactaatgaatataaggtgataag 11354082  T

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Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 223
Target Start/End: Complemental strand, 11373350 - 11373311
Alignment:
Q  184 ttggattccaacctaaaactaatgaatataaggtaataag 223  Q
    |||| ||||||||||||||||||||||||||||| |||||    
T  11373350 ttggcttccaacctaaaactaatgaatataaggtgataag 11373311  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 134
Target Start/End: Complemental strand, 9004132 - 9004088
Alignment:
Q  90 ttagtgatctgcaacccagtcacgggggagttcataagacttcct 134  Q
    |||||| | |||||||||||||| ||||| |||||||||||||||    
T  9004132 ttagtggtatgcaacccagtcactggggaattcataagacttcct 9004088  T

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Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 11 - 329
Target Start/End: Complemental strand, 9443833 - 9443515
Alignment:
Q  11 cagagatattgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9443833 cagagatattgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccaatagtgatctgcaacccagtc 9443734  T
Q  111 acgggggagttcataagacttcctgaatctactacaaatcgaactcgagtaagaatgcaaggtcaagctggttttggattccaacctaaaactaatgaat 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9443733 acgggggagttcataagacttcctgaatctactacaaatcgaactcgagtaagaatgcaaggtcaagctggttttggattccaacctaaaactaatgaat 9443634  T
Q  211 ataaggtaataagcgtgtggataagacatgttaaacatgccaatcagtgggtgtttgagcgtgtgatccttgagatacacactcttggaacattgtcatg 310  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||   || ||    
T  9443633 ataaggtaataagcgtgtggataagacatgttaaacaagccaatcagtgggtgtttgagcgtgtgatccttgagataaacacacttggaacaacatcctg 9443534  T
Q  311 gagaaatgttgaagtggat 329  Q
    |||||||||||||||||||    
T  9443533 gagaaatgttgaagtggat 9443515  T

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Target: chr7 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 11 - 329
Target Start/End: Original strand, 48361223 - 48361541
Alignment:
Q  11 cagagatattgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtc 110  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||    
T  48361223 cagagattttgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgatccatctttgggaaacccgttagtgatctgcaacccagtc 48361322  T
Q  111 acgggggagttcataagacttcctgaatctactacaaatcgaactcgagtaagaatgcaaggtcaagctggttttggattccaacctaaaactaatgaat 210  Q
    || |||||||||||||||||||||||||||||| |  |||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  48361323 acaggggagttcataagacttcctgaatctactgcgtatcgaactcgggtaagaatgcaaggacaagctggttttggtttccaacctaaaactaatgaat 48361422  T
Q  211 ataaggtaataagcgtgtggataagacatgttaaacatgccaatcagtgggtgtttgagcgtgtgatccttgagatacacactcttggaacattgtcatg 310  Q
    ||||||| |||| | ||||| | ||||||||||||| |||||||  ||||| ||||||||||||||||||||||||| |||| |||||||||   || ||    
T  48361423 ataaggtgataaacatgtgggtgagacatgttaaacgtgccaatgcgtgggagtttgagcgtgtgatccttgagataaacacacttggaacaccatcctg 48361522  T
Q  311 gagaaatgttgaagtggat 329  Q
    ||| |||||||||||||||    
T  48361523 gaggaatgttgaagtggat 48361541  T

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Target: chr7; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 31 - 329
Target Start/End: Complemental strand, 35780544 - 35780230
Alignment:
Q  31 atattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaa-cccattagtgatctgcaacccagtcacgggggagttcataagac 129  Q
    ||||||| ||||||||||||||||| |||||||||||| | |||| |   | ||| ||| |||||||| |||||||||||||||||||||||||||||||    
T  35780544 atattgtcaattcttgcaatggtttgctttgtttgtctaatccatataccgaaaaaccctttagtgatttgcaacccagtcacgggggagttcataagac 35780445  T
Q  130 ttcctgaatctactacaaatc------ga------ac---tcgagtaagaatgcaaggtcaagctggttttggattccaacctaaaactaatgaatataa 214  Q
    |||||||| ||||||| | ||      ||      ||   |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  35780444 ttcctgaagctactacgactcctttaagattaaatacggatcgagtaagaatgcaaggacaagctggttttggtttccaacctaaaactaatgaatataa 35780345  T
Q  215 ggtaataagcgtgtggataagacatgttaaacatgccaatcagtgggtgtttgagcgtgtgatccttgagatacacactcttggaacattgtcatggaga 314  Q
    ||| ||||   | ||||||||||||||| ||| ||||||| | ||||||||||| ||||| ||||| || ||| |||| |||||| ||   |||||||||    
T  35780344 ggtgataaaaatatggataagacatgttcaacgtgccaatgattgggtgtttgatcgtgttatcctcgaaataaacacacttggagcaccatcatggaga 35780245  T
Q  315 aatgttgaagtggat 329  Q
    | |||||||||||||    
T  35780244 actgttgaagtggat 35780230  T

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Target: chr1 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 197 - 329
Target Start/End: Complemental strand, 5131316 - 5131184
Alignment:
Q  197 taaaactaatgaatataaggtaataagcgtgtggataagacatgttaaacatgccaatcagtgggtgtttgagcgtgtgatccttgagatacacactctt 296  Q
    ||||||||||||||||||||| ||||   | ||| |||| |||||||||| ||||  ||  |||| ||||||||||||||||||||||||||||||||||    
T  5131316 taaaactaatgaatataaggtgataaaaatatgggtaaggcatgttaaacgtgccgttcgttgggagtttgagcgtgtgatccttgagatacacactctt 5131217  T
Q  297 ggaacattgtcatggagaaatgttgaagtggat 329  Q
    |||||||||||||||||||||||||||||||||    
T  5131216 ggaacattgtcatggagaaatgttgaagtggat 5131184  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 320
Target Start/End: Original strand, 26324109 - 26324187
Alignment:
Q  242 taaacatgccaatcagtgggtgtttgagcgtgtgatccttgagatacacactcttggaacattgtcatggagaaatgtt 320  Q
    ||||| ||| ||||| ||||| ||||||||||||||||||| |||  |||| |||||||||  ||| ||||||||||||    
T  26324109 taaacgtgctaatcaatgggtttttgagcgtgtgatccttgggatgaacacacttggaacaccgtcctggagaaatgtt 26324187  T

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Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 16717108 - 16716982
Alignment:
Q  20 tgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggag 119  Q
    |||||||||| ||||||||||||| || ||||| || || ||||||||||| ||| ||  |||||||||  ||||||||||||||||| ||| ||||||     
T  16717108 tgataagtttaatattgtgaattcatgtaatggcttgctatgtttgtctgaaccaactactggaaaccctatagtgatctgcaacccattcatgggggaa 16717009  T
Q  120 ttcataagacttcctgaatctactaca 146  Q
    |||||||||||||||||| ||||||||    
T  16717008 ttcataagacttcctgaaactactaca 16716982  T

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Target: scaffold0627 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 137
Target Start/End: Complemental strand, 5398 - 5293
Alignment:
Q  32 tattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggagttcataagactt 131  Q
    |||||||||||| || ||||| || || ||||||||| | ||| ||   |||||||| |||||||||||||||||| ||| |||||||||||||||||||    
T  5398 tattgtgaattcctgtaatggcttgctatgtttgtctcaaccaactaccggaaaccctttagtgatctgcaacccattcatgggggagttcataagactt 5299  T
Q  132 cctgaa 137  Q
    ||||||    
T  5298 cctgaa 5293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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