View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6537_low_17 (Length: 271)
Name: NF6537_low_17
Description: NF6537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6537_low_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 154 - 251
Target Start/End: Complemental strand, 21602579 - 21602482
Alignment:
| Q |
154 |
cgacgtgcactccgaaaataattatttgatttagaaagtgagaggcataagatttttatctaaaggatctattttaaatcatgtgtagatactgccta |
251 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
21602579 |
cgacgtgcacttcgaaaataattatttgatttagaaagtgagagatataagatttttatctaaatgatctattttaaatcatgtctagatactgccta |
21602482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 246
Target Start/End: Original strand, 1819203 - 1819295
Alignment:
| Q |
154 |
cgacgtgcactccgaaaataattatttgatttagaaagtgagaggcataagatttttatctaaaggatctattttaaatcatgtgtagatact |
246 |
Q |
| |
|
||||||||| ||| ||||| |||||||||||||||||||| || ||| | || ||||||||| |||| | |||||| |||||||||||||| |
|
|
| T |
1819203 |
cgacgtgcaatccaaaaatgattatttgatttagaaagtgtgaaacatcatatgtttatctaagggatatgttttaagccatgtgtagatact |
1819295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University