View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6537_low_18 (Length: 262)
Name: NF6537_low_18
Description: NF6537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6537_low_18 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 15 - 262
Target Start/End: Original strand, 2498194 - 2498441
Alignment:
| Q |
15 |
actttagacaccccaaaacctgctattacctgcaattactaaaaaattatcagaaacaaaagcttatttcaacattgcatattatttattgattagtttc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2498194 |
actttagacaccccaaaacctgctattacctgcaattactaaaaaattatcagaaacaaaagcttatttcaacattgcatattattctttgattagtttc |
2498293 |
T |
|
| Q |
115 |
aaaatttatttaagaataaaacttaaattctactaatctttcaccaaaaaatcccttaaattctaatcacacaaattacaaaattcaaggggttttaaac |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2498294 |
aaaatttatttaagaataaaacttaaattctactaatctttcaccaagaaatcccttaaattctaatcacacaaattacaaaattcaagggattttaaac |
2498393 |
T |
|
| Q |
215 |
acaactaacataaccacaaaaccactcataatataaacaaacataatc |
262 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2498394 |
acaactcacataaccacaaaaccactcataatataaacaaacataatc |
2498441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University