View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6537_low_4 (Length: 563)
Name: NF6537_low_4
Description: NF6537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6537_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 518; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 1 - 546
Target Start/End: Complemental strand, 43490152 - 43489607
Alignment:
| Q |
1 |
tccattcaaagcagcaagagtatggttaggaacatttgaaacagctgaagctgctgctagagcatatgatgaagctgctcttcgttttagaggcaacaaa |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43490152 |
tccattcaaagcagcaagagtatggttaggaacatttgaaacagctgaagcagctgctagagcatatgatgaagctgctcttcgttttagaggcaacaaa |
43490053 |
T |
|
| Q |
101 |
gccaaactcaatttccctgaaaatgttacacttcgtaaccctccaccagctactactactactcaatggaacgtttcgaattcaccgagttcgattgttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43490052 |
gccaaactcaatttccctgaaaatgttacacttcgtaaccctccaccagctactactactactcaatggaacgtttcgaattcaccgagttcgattgttt |
43489953 |
T |
|
| Q |
201 |
ctattacaacttctactgatcctgttgttcatactagaccttttcctaactcttctcagcattcgacaaacttttatgatcgttttcagttttcgggtat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43489952 |
ctattacaacttctactgatcctgttgttcatactagaccttttcctaactcttctcagcattcgacaaacttttatgatcgttttcagttttcgggtat |
43489853 |
T |
|
| Q |
301 |
tcctgctccaaggaatatttatgatgataatgtgattagggcttcttctgtggcttctcatctacaatcttcatcatcgtcgccagcttcttctttgtca |
400 |
Q |
| |
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|||| || |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43489852 |
tcctcctgcaaggaatgtttatgatgataatgtgattagggcttcttctatggcttctcatctacaatcttcatcatcgtcgccagcttcttctttgtca |
43489753 |
T |
|
| Q |
401 |
tcatcttcttctgcatttgtttcttctatgcagggcaatacttcagtttcctcgtatttttctactcagttgccaccttggtctacttcggatcatagct |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43489752 |
tcatcttcttctgcatttgtttcttctatgcagggcaatacttcagtttcctcgtatttttctactcagttgccaccttggtctacttcggatcagagct |
43489653 |
T |
|
| Q |
501 |
cttctccttcttgatgattaattttcaatgaatcagaggcaaaaac |
546 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
43489652 |
cttctccttcttgatgattaattttcaatgaatcacaggcaaaaac |
43489607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 45013985 - 45013921
Alignment:
| Q |
14 |
gcaagagtatggttaggaacatttgaaacagctgaagctgctgctagagcatatgatgaagctgc |
78 |
Q |
| |
|
||||| |||||| |||||||||||||||| ||||| ||||| || ||||||||||||||||| |
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|
| T |
45013985 |
gcaagggtatggctaggaacatttgaaacggctgaggctgcagccgttgcatatgatgaagctgc |
45013921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 5 - 128
Target Start/End: Complemental strand, 38653224 - 38653101
Alignment:
| Q |
5 |
ttcaaagcagcaagagtatggttaggaacatttgaaacagctgaagctgctgctagagcatatgatgaagctgctcttcgttttagaggcaacaaagcca |
104 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||||||| ||| |||| ||| |||||| ||||| | | ||||||||||| |||||||| | |
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| T |
38653224 |
ttcaaagctacaagagtatggttaggtacatttgaaacagctgaagatgcagctaaagcctatgatcaagcttcattgcgttttagaggaaacaaagcaa |
38653125 |
T |
|
| Q |
105 |
aactcaatttccctgaaaatgtta |
128 |
Q |
| |
|
||||||| |||||||||||||||| |
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|
| T |
38653124 |
aactcaacttccctgaaaatgtta |
38653101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 7 - 127
Target Start/End: Complemental strand, 44331856 - 44331736
Alignment:
| Q |
7 |
caaagcagcaagagtatggttaggaacatttgaaacagctgaagctgctgctagagcatatgatgaagctgctcttcgttttagaggcaacaaagccaaa |
106 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||| || |||||||| || ||||| || ||||||||||| | | || ||||| |||| ||| ||| |
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|
| T |
44331856 |
caaagcagcaagagtatggcttggaacatttgaaactgcagaagctgcagcaagagcttacgatgaagctgcattaagattcagaggaaacagagcgaaa |
44331757 |
T |
|
| Q |
107 |
ctcaatttccctgaaaatgtt |
127 |
Q |
| |
|
||||| ||||||||||||||| |
|
|
| T |
44331756 |
ctcaacttccctgaaaatgtt |
44331736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 128
Target Start/End: Original strand, 13409934 - 13410055
Alignment:
| Q |
7 |
caaagcagcaagagtatggttaggaacatttgaaacagctgaagctgctgctagagcatatgatgaagctgctcttcgttttagaggcaacaaagccaaa |
106 |
Q |
| |
|
||||||| |||||||||| |||||||||| || ||||| |||||||| ||||| || |||||||||||||| | | || ||||| | || ||| ||| |
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|
| T |
13409934 |
caaagcacaaagagtatggctaggaacattcgacacagcagaagctgcagctagggcttatgatgaagctgcattgagattcagaggaagcagagcaaaa |
13410033 |
T |
|
| Q |
107 |
ctcaatttccctgaaaatgtta |
128 |
Q |
| |
|
||||| |||||||||||||||| |
|
|
| T |
13410034 |
ctcaacttccctgaaaatgtta |
13410055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 4038752 - 4038815
Alignment:
| Q |
16 |
aagagtatggttaggaacatttgaaacagctgaagctgctgctagagcatatgatgaagctgct |
79 |
Q |
| |
|
|||||| ||||||||||| ||||| |||||||||| ||||||||||| |||||||| |||||| |
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|
| T |
4038752 |
aagagtttggttaggaacttttgatacagctgaagaagctgctagagcttatgatgaggctgct |
4038815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 10554652 - 10554722
Alignment:
| Q |
8 |
aaagcagcaagagtatggttaggaacatttgaaacagctgaagctgctgctagagcatatgatgaagctgc |
78 |
Q |
| |
|
|||| ||||||||| ||| | || || |||||||||||||||||||| |||| || |||||||||||||| |
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|
| T |
10554652 |
aaaggagcaagagtgtggcttggcacctttgaaacagctgaagctgcagctactgcttatgatgaagctgc |
10554722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 1726250 - 1726310
Alignment:
| Q |
15 |
caagagtatggttaggaacatttgaaacagctgaagctgctgctagagcatatgatgaagc |
75 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||| ||| || ||||||||||||||||| |
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|
| T |
1726250 |
caagaatatggttaggaacatttgaaacagcagaagatgcagcaagagcatatgatgaagc |
1726310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 2428731 - 2428679
Alignment:
| Q |
23 |
tggttaggaacatttgaaacagctgaagctgctgctagagcatatgatgaagc |
75 |
Q |
| |
|
||||||||||||||||| |||||||||| || |||||||||||||||||||| |
|
|
| T |
2428731 |
tggttaggaacatttgagacagctgaagaagcagctagagcatatgatgaagc |
2428679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 44648738 - 44648686
Alignment:
| Q |
23 |
tggttaggaacatttgaaacagctgaagctgctgctagagcatatgatgaagc |
75 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||| ||||||||||||||| |
|
|
| T |
44648738 |
tggttaggaacatttgaaacagctgaagaagcagctaaagcatatgatgaagc |
44648686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 3160284 - 3160346
Alignment:
| Q |
16 |
aagagtatggttaggaacatttgaaacagctgaagctgctgctagagcatatgatgaagctgc |
78 |
Q |
| |
|
|||||| ||||||||||| ||||| |||||||||| ||||| ||||| |||||||||||||| |
|
|
| T |
3160284 |
aagagtttggttaggaacttttgatacagctgaagaagctgcaagagcctatgatgaagctgc |
3160346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 6568948 - 6568990
Alignment:
| Q |
8 |
aaagcagcaagagtatggttaggaacatttgaaacagctgaag |
50 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||| |||||||||| |
|
|
| T |
6568948 |
aaagcagctagagtttggttaggaacatttgatacagctgaag |
6568990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 6583107 - 6583149
Alignment:
| Q |
8 |
aaagcagcaagagtatggttaggaacatttgaaacagctgaag |
50 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||| |||||||||| |
|
|
| T |
6583107 |
aaagcagctagagtttggttaggaacatttgacacagctgaag |
6583149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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