View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6537_low_6 (Length: 483)

Name: NF6537_low_6
Description: NF6537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6537_low_6
NF6537_low_6
[»] chr5 (30 HSPs)
chr5 (118-477)||(2023332-2023700)
chr5 (209-477)||(38107219-38107475)
chr5 (118-275)||(2024195-2024353)
chr5 (118-276)||(16799818-16799974)
chr5 (118-175)||(4533133-4533190)
chr5 (130-276)||(183087-183233)
chr5 (108-271)||(29353512-29353676)
chr5 (117-275)||(38107979-38108139)
chr5 (118-166)||(4534072-4534120)
chr5 (113-175)||(38107135-38107198)
chr5 (117-175)||(5015127-5015185)
chr5 (118-171)||(9072276-9072329)
chr5 (29-101)||(39933433-39933505)
chr5 (121-175)||(9070677-9070731)
chr5 (117-171)||(28223668-28223722)
chr5 (118-236)||(29993323-29993442)
chr5 (118-163)||(12950070-12950115)
chr5 (118-171)||(29352490-29352543)
chr5 (118-171)||(29994293-29994346)
chr5 (25-101)||(33574129-33574206)
chr5 (118-166)||(5014018-5014066)
chr5 (204-264)||(16793619-16793679)
chr5 (59-99)||(27365639-27365679)
chr5 (128-163)||(12935913-12935948)
chr5 (59-97)||(29630395-29630433)
chr5 (118-171)||(8674073-8674126)
chr5 (118-171)||(42877086-42877139)
chr5 (208-279)||(4533956-4534027)
chr5 (59-99)||(25593368-25593408)
chr5 (25-97)||(40269007-40269079)
[»] chr1 (34 HSPs)
chr1 (118-276)||(1532470-1532631)
chr1 (107-282)||(24033046-24033222)
chr1 (119-277)||(29183353-29183512)
chr1 (118-271)||(31376529-31376684)
chr1 (119-268)||(30106970-30107118)
chr1 (118-268)||(16276872-16277022)
chr1 (118-171)||(1531635-1531688)
chr1 (118-171)||(16273730-16273783)
chr1 (118-171)||(22778642-22778695)
chr1 (118-268)||(24037903-24038053)
chr1 (117-268)||(43916165-43916312)
chr1 (118-271)||(52142869-52143023)
chr1 (120-260)||(43914909-43915049)
chr1 (213-275)||(1075897-1075959)
chr1 (187-276)||(22776572-22776661)
chr1 (118-166)||(24032033-24032081)
chr1 (118-244)||(30105434-30105562)
chr1 (128-165)||(5971096-5971133)
chr1 (399-459)||(1075210-1075270)
chr1 (51-99)||(10920131-10920179)
chr1 (51-99)||(23818267-23818315)
chr1 (28-110)||(3929164-3929246)
chr1 (34-97)||(23347007-23347069)
chr1 (30-101)||(23347517-23347588)
chr1 (117-171)||(31377677-31377731)
chr1 (59-97)||(36681532-36681570)
chr1 (59-97)||(51097519-51097557)
chr1 (208-276)||(16273827-16273895)
chr1 (61-110)||(22914697-22914745)
chr1 (29-73)||(13265545-13265589)
chr1 (31-111)||(19138833-19138913)
chr1 (38-97)||(19790846-19790905)
chr1 (120-171)||(43600906-43600958)
chr1 (117-165)||(43602072-43602120)
[»] chr8 (41 HSPs)
chr8 (118-276)||(26363493-26363652)
chr8 (39-117)||(6373729-6373806)
chr8 (118-279)||(39581893-39582056)
chr8 (118-271)||(1192017-1192172)
chr8 (118-271)||(36984146-36984298)
chr8 (118-271)||(41774681-41774835)
chr8 (117-267)||(23753258-23753410)
chr8 (120-175)||(35562246-35562301)
chr8 (118-175)||(14055453-14055510)
chr8 (118-171)||(45021652-45021705)
chr8 (118-276)||(4377939-4378097)
chr8 (118-175)||(14054118-14054175)
chr8 (118-171)||(39688990-39689043)
chr8 (118-167)||(44296720-44296769)
chr8 (118-166)||(39688342-39688390)
chr8 (118-165)||(28301659-28301706)
chr8 (106-165)||(36985311-36985370)
chr8 (118-169)||(41944355-41944406)
chr8 (118-271)||(45020585-45020739)
chr8 (118-167)||(6571326-6571375)
chr8 (118-171)||(26830325-26830378)
chr8 (118-171)||(26831447-26831500)
chr8 (118-171)||(45519495-45519548)
chr8 (118-166)||(22255574-22255622)
chr8 (121-171)||(39580795-39580845)
chr8 (117-166)||(1190968-1191017)
chr8 (113-166)||(6572444-6572497)
chr8 (117-166)||(44297823-44297872)
chr8 (118-171)||(45518168-45518221)
chr8 (31-99)||(5664345-5664412)
chr8 (121-161)||(23410074-23410114)
chr8 (117-165)||(35563495-35563543)
chr8 (119-171)||(44066734-44066786)
chr8 (59-110)||(16664626-16664677)
chr8 (118-165)||(28301344-28301391)
chr8 (32-79)||(32318068-32318115)
chr8 (118-164)||(23754387-23754433)
chr8 (59-97)||(37550947-37550985)
chr8 (25-110)||(37551671-37551753)
chr8 (29-97)||(36228511-36228579)
chr8 (204-268)||(44065573-44065636)
[»] chr7 (23 HSPs)
chr7 (118-275)||(7314148-7314307)
chr7 (118-274)||(16957161-16957319)
chr7 (118-268)||(42337069-42337221)
chr7 (118-165)||(35960213-35960260)
chr7 (117-166)||(42338160-42338209)
chr7 (116-175)||(12385488-12385547)
chr7 (117-171)||(7313070-7313124)
chr7 (118-171)||(40319551-40319604)
chr7 (118-166)||(17352890-17352938)
chr7 (113-165)||(40658999-40659051)
chr7 (33-100)||(29065406-29065473)
chr7 (118-165)||(46469141-46469188)
chr7 (60-110)||(43103823-43103873)
chr7 (118-166)||(12384093-12384141)
chr7 (118-166)||(35959081-35959129)
chr7 (212-276)||(37627558-37627622)
chr7 (59-97)||(41115495-41115533)
chr7 (118-168)||(47508952-47509002)
chr7 (118-171)||(17353878-17353931)
chr7 (118-171)||(40322557-40322610)
chr7 (25-81)||(15894601-15894657)
chr7 (119-171)||(37628554-37628606)
chr7 (117-165)||(40659318-40659365)
[»] chr6 (18 HSPs)
chr6 (118-276)||(20891806-20891966)
chr6 (118-268)||(15976612-15976764)
chr6 (117-271)||(26444485-26444641)
chr6 (118-171)||(15981023-15981076)
chr6 (117-171)||(20583979-20584033)
chr6 (118-175)||(14456192-14456249)
chr6 (118-171)||(20583017-20583070)
chr6 (117-171)||(26444861-26444915)
chr6 (114-167)||(3489368-3489421)
chr6 (31-95)||(30373072-30373135)
chr6 (118-162)||(646692-646736)
chr6 (118-166)||(3488034-3488082)
chr6 (59-97)||(22046432-22046470)
chr6 (59-97)||(22058840-22058878)
chr6 (28-97)||(8172957-8173026)
chr6 (121-165)||(646828-646871)
chr6 (118-166)||(4370898-4370946)
chr6 (123-171)||(15888976-15889024)
[»] chr4 (39 HSPs)
chr4 (118-274)||(10615988-10616146)
chr4 (128-276)||(1961068-1961218)
chr4 (119-275)||(6047064-6047221)
chr4 (417-477)||(6047698-6047758)
chr4 (119-276)||(46170300-46170456)
chr4 (118-274)||(2420872-2421028)
chr4 (117-171)||(56113760-56113814)
chr4 (118-165)||(56112695-56112742)
chr4 (118-175)||(22812633-22812691)
chr4 (118-168)||(40872955-40873005)
chr4 (118-171)||(18705398-18705451)
chr4 (117-165)||(49700727-49700775)
chr4 (118-165)||(34155898-34155945)
chr4 (120-171)||(52035155-52035206)
chr4 (28-97)||(50183196-50183265)
chr4 (118-166)||(22813297-22813345)
chr4 (120-271)||(40841995-40842148)
chr4 (25-97)||(46577504-46577576)
chr4 (116-171)||(34369662-34369717)
chr4 (33-100)||(49574075-49574142)
chr4 (120-171)||(52034154-52034205)
chr4 (128-166)||(40874066-40874104)
chr4 (118-171)||(10614803-10614856)
chr4 (29-110)||(11380272-11380352)
chr4 (118-166)||(18703217-18703266)
chr4 (118-171)||(18704414-18704467)
chr4 (118-166)||(1960895-1960943)
chr4 (31-95)||(6353657-6353720)
chr4 (118-170)||(39702666-39702718)
chr4 (185-268)||(31183820-31183902)
chr4 (117-156)||(31183895-31183934)
chr4 (118-165)||(49700415-49700462)
chr4 (51-97)||(1866236-1866282)
chr4 (59-97)||(11380997-11381035)
chr4 (117-171)||(18667321-18667375)
chr4 (118-172)||(34370769-34370823)
chr4 (28-97)||(6049830-6049899)
chr4 (121-166)||(31182620-31182665)
chr4 (57-97)||(56295240-56295280)
[»] scaffold0008 (1 HSPs)
scaffold0008 (118-274)||(268411-268568)
[»] chr3 (34 HSPs)
chr3 (123-276)||(17341395-17341550)
chr3 (128-276)||(40630523-40630673)
chr3 (118-276)||(40630018-40630178)
chr3 (118-279)||(38261305-38261468)
chr3 (117-171)||(2213921-2213975)
chr3 (118-166)||(37087113-37087161)
chr3 (118-264)||(37088070-37088216)
chr3 (131-276)||(38262240-38262385)
chr3 (118-172)||(37023812-37023866)
chr3 (118-171)||(6247384-6247437)
chr3 (58-110)||(8652012-8652064)
chr3 (118-166)||(45580108-45580156)
chr3 (117-172)||(50297315-50297370)
chr3 (113-171)||(6248458-6248516)
chr3 (118-171)||(45583261-45583314)
chr3 (118-171)||(52986254-52986307)
chr3 (120-171)||(9434447-9434498)
chr3 (39-97)||(25080820-25080878)
chr3 (206-271)||(9435465-9435530)
chr3 (117-166)||(17340467-17340516)
chr3 (28-97)||(36502359-36502427)
chr3 (184-279)||(17340539-17340635)
chr3 (45-97)||(25081537-25081589)
chr3 (31-99)||(35653810-35653877)
chr3 (118-166)||(52985130-52985178)
chr3 (128-171)||(50296216-50296259)
chr3 (58-100)||(8651289-8651331)
chr3 (29-99)||(35653120-35653189)
chr3 (59-97)||(46915800-46915838)
chr3 (59-97)||(55337592-55337630)
chr3 (399-436)||(38261607-38261644)
chr3 (56-97)||(45059790-45059831)
chr3 (56-97)||(45082203-45082244)
chr3 (38-110)||(17604802-17604874)
[»] scaffold0151 (4 HSPs)
scaffold0151 (129-276)||(24817-24965)
scaffold0151 (129-276)||(37334-37482)
scaffold0151 (118-279)||(38257-38421)
scaffold0151 (400-436)||(38095-38131)
[»] chr2 (19 HSPs)
chr2 (118-279)||(27849279-27849441)
chr2 (118-171)||(27848336-27848389)
chr2 (118-169)||(3627615-3627666)
chr2 (128-274)||(26068901-26069049)
chr2 (128-276)||(33076153-33076302)
chr2 (118-171)||(42700950-42701003)
chr2 (208-279)||(44702364-44702435)
chr2 (118-171)||(20126185-20126238)
chr2 (117-268)||(33075185-33075336)
chr2 (118-171)||(24607784-24607837)
chr2 (131-171)||(3453348-3453388)
chr2 (118-166)||(42702126-42702174)
chr2 (54-97)||(13913460-13913503)
chr2 (113-171)||(3454450-3454508)
chr2 (59-97)||(44356819-44356857)
chr2 (118-171)||(20127356-20127409)
chr2 (117-170)||(30796247-30796300)
chr2 (60-109)||(44536580-44536628)
chr2 (31-95)||(3769327-3769390)
[»] scaffold0827 (1 HSPs)
scaffold0827 (116-243)||(3218-3347)
[»] scaffold0446 (1 HSPs)
scaffold0446 (118-165)||(11561-11608)
[»] scaffold1212 (2 HSPs)
scaffold1212 (118-166)||(2135-2183)
scaffold1212 (204-276)||(2196-2268)
[»] scaffold0203 (3 HSPs)
scaffold0203 (118-171)||(9562-9615)
scaffold0203 (118-171)||(14936-14989)
scaffold0203 (118-171)||(16110-16163)
[»] scaffold0050 (2 HSPs)
scaffold0050 (118-171)||(81012-81065)
scaffold0050 (119-171)||(79834-79886)
[»] scaffold0285 (1 HSPs)
scaffold0285 (25-97)||(16830-16901)
[»] scaffold0006 (1 HSPs)
scaffold0006 (31-111)||(139302-139382)


Alignment Details
Target: chr5 (Bit Score: 108; Significance: 5e-54; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 118 - 477
Target Start/End: Original strand, 2023332 - 2023700
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc-tattnnnnnnn-tggcaaaagtggccctccatctctacccccttt 215  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||| |||| ||||        ||||||||||| |||  ||| |||||||| |||    
T  2023332 ggcttaaacccactatttaccccctaagtttacaaaagttgcaattttggccccctattaaaaaaaatggcaaaagtgaccc--catatctacccc-ttt 2023428  T
Q  216 tgtaaaatgtcaattttgactcgatcaaccatacgtggcatgccacctgtgtatttattttattattannnnnnnnnataattgttaattccacatgtta 315  Q
    || |||| ||||||||| ||| | ||||||||| |||||||||||||||||||||||||||||||||          ||||||||||||||||| |||||    
T  2023429 tgcaaaacgtcaattttaacttggtcaaccatatgtggcatgccacctgtgtatttattttattatt-tatttttttataattgttaattccacgtgtta 2023527  T
Q  316 attaaacaaattnnnnnnnnnnnnnnnnnttgagtgaaaatatagaaggcaagtgca-agtctttagcctttcattttctagggtttttcccc------- 407  Q
    ||||||||||||                 ||||  ||||||| |||||||| ||||| ||||| | ||||||||||||||||| |||||||||           
T  2023528 attaaacaaattaaaaaagaaaagaaaaattgatagaaaatagagaaggcacgtgcagagtctctggcctttcattttctaggatttttccccatttttt 2023627  T
Q  408 ---caattcctttcatctccccttatctttccctcttccatcgtatcacaaccctttatctcaattcttctca 477  Q
       ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2023628 ccccaattcctttcatctccccttatctttccctcttccatcgtatcacaacccttcatctcaattcttctca 2023700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 209 - 477
Target Start/End: Original strand, 38107219 - 38107475
Alignment:
Q  209 ccccttttgtaaaatgtcaattttgactcgatcaaccatacgtggcatgccacctgtgtatttattttattattannnnnnnnnataattgttaattcca 308  Q
    ||||||||| |||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||             ||||||||||||||||    
T  38107219 ccccttttgcaaaacgtcaattttgactcggtcaaccatatgtggcatgccacctgtgtatttattttttt------------tataattgttaattcca 38107306  T
Q  309 catgttaattaaacaaattnnnnnnnnnnnnnnnnnttgagtgaaaatatagaaggcaagtgca-agtctttagcctttcattttctagggtttttcccc 407  Q
    |  ||||||||||||||||                 ||||  ||||||| |||||||| ||| | ||||||||||||||||||||||| |||||||||||    
T  38107307 cgcgttaattaaacaaattaaaaaagaaaagaaaaattgatagaaaatagagaaggcacgtggagagtctttagcctttcattttctatggtttttcccc 38107406  T
Q  408 caattcctttcatctccccttatctttccctcttccatcgtatcacaaccctttatctcaattcttctca 477  Q
     |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||    
T  38107407 -aattcctttcatctccccttatatttccctcttccatcgtatcacaacccttcatctcaattattctca 38107475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 118 - 275
Target Start/End: Complemental strand, 2024353 - 2024195
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttg-acccctattnnnnnnntggcaaaagtggccctccatctctaccccctttt 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||       |||||||| ||  ||   || |||||||||||||    
T  2024353 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgttcccctattaaaaaaatggcaaaaatgatcccttatgtctaccccctttt 2024254  T
Q  217 gtaaaatgtcaattttgactcgatcaaccatacgtggcatgccacctgtgtatttattt 275  Q
    | |||| ||||||||||||||  |||||| || ||||||||||||||||||||||||||    
T  2024253 gcaaaacgtcaattttgactcagtcaaccgtatgtggcatgccacctgtgtatttattt 2024195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 118 - 276
Target Start/End: Complemental strand, 16799974 - 16799818
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttga-cccctattnnnnnnntggcaaaagtggccctccatctctaccccctttt 216  Q
    ||||||||||||||||||  ||| |||||||||||||||||||||||||| ||||||||       ||||||||||| ||  |||  |||| ||||||||    
T  16799974 ggcttaaacccactttttgtcccttaagtttgcaaaagttgcaattttgaccccctattaaaaaaatggcaaaagtgacc--ccacgtcta-cccctttt 16799878  T
Q  217 gtaaaatgtcaattttgactcgatcaaccatacgtggcatgccacctgtgtatttatttt 276  Q
    | |||| ||||||||||||||  ||||||||| |||||| ||||||||| ||||||||||    
T  16799877 gcaaaaggtcaattttgactcagtcaaccatatgtggcacgccacctgtatatttatttt 16799818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 4533133 - 4533190
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccctatt 175  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  4533133 ggcttaaactcactttttaccccctaagtttgcaaaagttgcaattttggcccctatt 4533190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 130 - 276
Target Start/End: Complemental strand, 183233 - 183087
Alignment:
Q  130 ctttttaccccctaagtttgcaaaagttgcaattttgacccc-tattnnnnnnn-tggcaaaagtggccctccatctctacccccttttgtaaaatgtca 227  Q
    |||||| |||| ||||||||||||||||||||||||| |||| ||||        ||||||||||| |||  ||| |||||||||||||| |||| ||||    
T  183233 ctttttgccccttaagtttgcaaaagttgcaattttggccccctattaaaaaaaatggcaaaagtgaccc--catgtctacccccttttgcaaaacgtca 183136  T
Q  228 attttgactcgatcaaccatacgtggcatgccacctgtgtatttatttt 276  Q
    ||||||||||  |||| | || |||||| ||||||||||||||||||||    
T  183135 attttgactcagtcaatcctatgtggcacgccacctgtgtatttatttt 183087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 108 - 271
Target Start/End: Complemental strand, 29353676 - 29353512
Alignment:
Q  108 ataacaaaatggcttaaacccactttttaccccctaagtttgcaaaagttgcaatttt-gacccctatt-nnnnnnntggcaaaagtggccctccatctc 205  Q
    |||| |||| |||||||||| |||||| |||| |||||||||||||||| |||||||| | ||||||||        ||||||||||| ||| |||| |     
T  29353676 ataaaaaaaaggcttaaacctacttttcaccctctaagtttgcaaaagtagcaattttggtcccctattaaaaaaaatggcaaaagtgaccc-ccatgtt 29353578  T
Q  206 tacccccttttgtaaaatgtcaattttgactcgatcaaccatacgtggcatgccacctgtgtattt 271  Q
    |||||| ||||  ||||  ||||||||||| |  ||||||||| ||||||||||||||||||||||    
T  29353577 taccccattttacaaaagctcaattttgacccagtcaaccatatgtggcatgccacctgtgtattt 29353512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 117 - 275
Target Start/End: Complemental strand, 38108139 - 38107979
Alignment:
Q  117 tggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgaccc-ctatt--nnnnnnntggcaaaagtggccctccatctctaccccct 213  Q
    |||||||||||||||||||||||||||||||||||| || || ||||||| ||| |||||         |||||||| || |||   || ||||||| ||    
T  38108139 tggcttaaacccactttttaccccctaagtttgcaacagctgtaattttggccctctattaaaaaaaaatggcaaaaatgaccccttatgtctaccctct 38108040  T
Q  214 tttgtaaaatgtcaattttgactcgatcaaccatacgtggcatgccacctgtgtatttattt 275  Q
    |||| |||| |||||||||||| |  | |||| || ||||||||||||||||||||||||||    
T  38108039 tttgcaaaacgtcaattttgac-cagtaaaccgtatgtggcatgccacctgtgtatttattt 38107979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 4534120 - 4534072
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttg 166  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||    
T  4534120 ggcttaaattcactttttaccccctaagtttgcaaaagttgcaattttg 4534072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 113 - 175
Target Start/End: Original strand, 38107135 - 38107198
Alignment:
Q  113 aaaatggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttga-cccctatt 175  Q
    |||| |||||||| |||||||||||| ||||||||||||||| |||||||||||| ||||||||    
T  38107135 aaaaaggcttaaatccactttttacctcctaagtttgcaaaaattgcaattttgaccccctatt 38107198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 117 - 175
Target Start/End: Complemental strand, 5015185 - 5015127
Alignment:
Q  117 tggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccctatt 175  Q
    |||||||||| ||||||||| ||| |||||||| |||||||||||||||| ||||||||    
T  5015185 tggcttaaactcactttttaacccttaagtttgtaaaagttgcaattttggcccctatt 5015127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 9072329 - 9072276
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    ||||||||| ||||| |||||| |||| ||||||||||||||||||||||||||    
T  9072329 ggcttaaacgcacttcttaccctctaactttgcaaaagttgcaattttgacccc 9072276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 39933505 - 39933433
Alignment:
Q  29 taaagattgatccaagggttacaattcaaccctctcatctctcattataaaaactcctctcacttgatacatc 101  Q
    |||||||||||| ||||||||  ||| |||||||||||||||||  |||| |  |||||||||||||||||||    
T  39933505 taaagattgatcaaagggttatgatttaaccctctcatctctcacaataagatgtcctctcacttgatacatc 39933433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 121 - 175
Target Start/End: Original strand, 9070677 - 9070731
Alignment:
Q  121 ttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccctatt 175  Q
    |||||| |||||||||||| |||| ||||||||||||| ||||||| ||||||||    
T  9070677 ttaaacgcactttttaccctctaattttgcaaaagttgtaattttggcccctatt 9070731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 28223722 - 28223668
Alignment:
Q  117 tggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    |||||||||| ||||||||| || |||| ||||||||||||||||||||| ||||    
T  28223722 tggcttaaactcactttttatcctctaactttgcaaaagttgcaattttggcccc 28223668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 236
Target Start/End: Original strand, 29993323 - 29993442
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgac-ccctattnnnnnnntggcaaaagtggccctccatctctaccccctttt 216  Q
    ||||||||| ||||||| |||| |||||||||||||||||| ||||||| | |||||||       ||||||||||| ||| |||| | || ||| ||||    
T  29993323 ggcttaaacgcacttttaaccctctaagtttgcaaaagttgtaattttggcaccctattaaaaaaatggcaaaagtgaccccccatgtttatcccatttt 29993422  T
Q  217 gtaaaatgtcaattttgact 236  Q
    | ||||  ||||||||||||    
T  29993423 gcaaaacctcaattttgact 29993442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 118 - 163
Target Start/End: Complemental strand, 12950115 - 12950070
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaatt 163  Q
    |||| |||| |||||||| |||||||||||||||||||||||||||    
T  12950115 ggctaaaacgcactttttgccccctaagtttgcaaaagttgcaatt 12950070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 29352490 - 29352543
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    ||||||||||||||||| |||| |||| ||||||||||| ||||||||| ||||    
T  29352490 ggcttaaacccacttttcaccctctaaatttgcaaaagtagcaattttggcccc 29352543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 29994346 - 29994293
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    |||||||||  ||| ||||| |||||||||||||||||||| ||||||||||||    
T  29994346 ggcttaaacgtactatttactccctaagtttgcaaaagttgtaattttgacccc 29994293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 25 - 101
Target Start/End: Complemental strand, 33574206 - 33574129
Alignment:
Q  25 atggtaaagattgatccaagggttacaattcaaccctctcatc-tctcattataaaaactcctctcacttgatacatc 101  Q
    |||||||||||||||| || ||||| |||| || ||||||| | ||||||| |||||  |||||||||||||||||||    
T  33574206 atggtaaagattgatctaaaggttataatttaatcctctcaccctctcattctaaaatgtcctctcacttgatacatc 33574129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 5014018 - 5014066
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttg 166  Q
    |||||||||| |||||||||||  ||||||||||||||||| |||||||    
T  5014018 ggcttaaacctactttttaccctttaagtttgcaaaagttgtaattttg 5014066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 204 - 264
Target Start/End: Original strand, 16793619 - 16793679
Alignment:
Q  204 tctacccccttttgtaaaatgtcaattttgactcgatcaaccatacgtggcatgccacctg 264  Q
    |||||||||||||| ||||  |||||||||||||  ||||||||| |||||| ||||||||    
T  16793619 tctacccccttttgcaaaagatcaattttgactcagtcaaccatatgtggcacgccacctg 16793679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 27365639 - 27365679
Alignment:
Q  59 cctctcatctctcattataaaaactcctctcacttgataca 99  Q
    ||||||||||||||||||||||  |||||||||||||||||    
T  27365639 cctctcatctctcattataaaatgtcctctcacttgataca 27365679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 163
Target Start/End: Complemental strand, 12935948 - 12935913
Alignment:
Q  128 cactttttaccccctaagtttgcaaaagttgcaatt 163  Q
    |||||||| |||||||||||||||||||||||||||    
T  12935948 cactttttgccccctaagtttgcaaaagttgcaatt 12935913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 97
Target Start/End: Complemental strand, 29630433 - 29630395
Alignment:
Q  59 cctctcatctctcattataaaaactcctctcacttgata 97  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  29630433 cctctcatctctcattataactactcctctcacttgata 29630395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 8674126 - 8674073
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    ||||||||| |||| || |||||||||||||||||||||  | |||||||||||    
T  8674126 ggcttaaacgcactattcaccccctaagtttgcaaaagtaacgattttgacccc 8674073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 42877139 - 42877086
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    |||| |||| |||||||| || | ||||||||||||||||| ||||||||||||    
T  42877139 ggctaaaacgcactttttgcctcttaagtttgcaaaagttgtaattttgacccc 42877086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 208 - 279
Target Start/End: Complemental strand, 4534027 - 4533956
Alignment:
Q  208 cccccttttgtaaaatgtcaattttgactcga-tcaaccatacgtggcatgccacctgtgtatttattttatt 279  Q
    ||||||||||||||| ||| |||||||| ||| ||||| ||| |||||||||||||||  ||||| |||||||    
T  4534027 cccccttttgtaaaacgtcgattttgac-cgagtcaactatatgtggcatgccacctggatattttttttatt 4533956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 25593408 - 25593368
Alignment:
Q  59 cctctcatctctcattataaaaactcctctcacttgataca 99  Q
    ||||||||||||||  ||||| |||||||||||||||||||    
T  25593408 cctctcatctctcaccataaatactcctctcacttgataca 25593368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 40269079 - 40269007
Alignment:
Q  25 atggtaaagattgatccaagggttacaattcaaccctctcatctctcattataaaaactcctctcacttgata 97  Q
    ||||||| ||||||||||||||||   ||| |||| ||||| |||| ||| ||| ||||| ||||||||||||    
T  40269079 atggtaatgattgatccaagggttgtcatttaaccttctcacctcttattttaagaactcttctcacttgata 40269007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 118 - 276
Target Start/End: Complemental strand, 1532631 - 1532470
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc-tattnnnnnnn--tggcaaaagtggccctccatctctaccccctt 214  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||         ||||||||||| ||| |||| |||||||||||    
T  1532631 ggcttaaacccactttttaccccctaagtttgcagaagttgcaattttggccccatattaaaaaaaaatggcaaaagtgaccccccatgtctaccccctt 1532532  T
Q  215 ttgtaaaatgtcaattttgactcgatcaaccatacgtggcatgccacctgtgtatttatttt 276  Q
    ||| ||||||||||||||||||   |||||| || |||||| |||||| |||||||||||||    
T  1532531 ttgcaaaatgtcaattttgacttagtcaaccgtatgtggcacgccacccgtgtatttatttt 1532470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 107 - 282
Target Start/End: Complemental strand, 24033222 - 24033046
Alignment:
Q  107 tataacaaaatggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc-tattnnnnnnn-tggcaaaagtggccctccatct 204  Q
    ||||||| | ||||||||||| |||||| |||| |||||||||||||||| ||||||||| |||| ||||        ||||||||||| ||| |||| |    
T  24033222 tataacagattggcttaaacctacttttcaccctctaagtttgcaaaagtagcaattttggccccctattaaaaaaaatggcaaaagtgaccccccatat 24033123  T
Q  205 ctacccccttttgtaaaatgtcaattttgactcgatcaaccatacgtggcatgccacctgtgtatttattttattatt 282  Q
     |||||||||||| ||||  ||||||||||| |  ||||||||| |||||||||||||||||||||| ||||||||||    
T  24033122 ttacccccttttgcaaaacctcaattttgacccagtcaaccatatgtggcatgccacctgtgtattt-ttttattatt 24033046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 119 - 277
Target Start/End: Complemental strand, 29183512 - 29183353
Alignment:
Q  119 gcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc-tattnnnnnnntggcaaaagtggccctccatctctacccccttttg 217  Q
    |||||||| |||||||||||| ||||||||| |||||||||||||||| |||| ||||        |||||||||| ||| |||| | ||||||||||||    
T  29183512 gcttaaacacactttttaccctctaagtttgaaaaagttgcaattttggccccctattaaaaaaaaggcaaaagtgaccccccatatatacccccttttg 29183413  T
Q  218 taaaatgtcaattttgactcgatcaaccatacgtggcatgccacctgtgtatttatttta 277  Q
     |||| ||||||||||||||  |||||||||  ||||| | ||||||||||||| |||||    
T  29183412 caaaacgtcaattttgactcagtcaaccatatatggcacgtcacctgtgtatttttttta 29183353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 118 - 271
Target Start/End: Original strand, 31376529 - 31376684
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccctattnnnnnnn--tggcaaaagtggccctccatctctacccccttt 215  Q
    ||||||||| ||||||| |||| |||||||||||||||||||||||||| ||||  ||         ||||||||||| |||  ||| | ||||||||||    
T  31376529 ggcttaaacgcacttttcaccctctaagtttgcaaaagttgcaattttggcccccttttaaaaaaaatggcaaaagtgacccctcatgtttacccccttt 31376628  T
Q  216 tgtaaaatgtcaattttgactcgatcaaccatacgtggcatgccacctgtgtattt 271  Q
    || ||||  |||||||||||||  ||||||||| ||| ||||||||||||||||||    
T  31376629 tgcaaaacctcaattttgactcagtcaaccatatgtgtcatgccacctgtgtattt 31376684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 119 - 268
Target Start/End: Complemental strand, 30107118 - 30106970
Alignment:
Q  119 gcttaaacccactttttaccccctaagtttgcaaaagttgcaattttga-cccctattnnnnnnntggcaaaagtggccctccatctctacccccttttg 217  Q
    |||||||| |||||||  ||||||||||||||||| ||||||||||||  ||||| ||       ||||||||||| |||  ||| |||| ||||||||     
T  30107118 gcttaaacgcacttttcgccccctaagtttgcaaatgttgcaattttggtcccctgttaaaaaaatggcaaaagtgaccc--catgtctatcccctttta 30107021  T
Q  218 taaaatgtcaattttgactcgatcaaccatacgtggcatgccacctgtgta 268  Q
     |||| |||||||||||||| ||||||| || |||||||||||||||||||    
T  30107020 caaaacgtcaattttgactcaatcaaccgtatgtggcatgccacctgtgta 30106970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 118 - 268
Target Start/End: Complemental strand, 16277022 - 16276872
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaatttt-gacccctattnnnnnnntggcaaaagtggccctccatctctaccccctttt 216  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||       |||||||||   ||| |||| | | |||||||||    
T  16277022 ggcttaaactcactttttaccccctaagtttgcaaaagttgcaattttggccccctattaaaaaaatggcaaaagctaccc-ccatgttttccccctttt 16276924  T
Q  217 gtaaaatgtcaattttgactcga-tcaaccatacgtggcatgccacctgtgta 268  Q
    | |||| ||| |||||||| ||| ||||||||| |||||||||||| ||||||    
T  16276923 gcaaaacgtcgattttgac-cgagtcaaccatatgtggcatgccacatgtgta 16276872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 1531635 - 1531688
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  1531635 ggcttaaactcactttttactccctaagtttgcaaaagttgcaattttgacccc 1531688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 16273730 - 16273783
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  16273730 ggcttaaactcactttttaccccataagtttgcaaaagttgcaattttgacccc 16273783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 22778695 - 22778642
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  22778695 ggcttaaatccactttttaccccctaagtttgcaaaagttgcaattttggcccc 22778642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 118 - 268
Target Start/End: Original strand, 24037903 - 24038053
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc--tattnnnnnnntggcaaaagtggccctccatctctacccccttt 215  Q
    ||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||  | |        ||||||||||| ||  |||| | ||||| ||||    
T  24037903 ggcttaaactcactttttatcccttaagtttgcaaaagttgcaattttgacccccttttaaaaaaaatggcaaaagtgacc--ccatgtttaccctcttt 24038000  T
Q  216 tgtaaaatgtcaattttgactcgatcaaccatacgtggcatgccacctgtgta 268  Q
    || ||||  ||||||||||| || |||||||||| ||||||||||| ||||||    
T  24038001 tgcaaaacatcaattttgacccggtcaaccatacttggcatgccacatgtgta 24038053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 117 - 268
Target Start/End: Complemental strand, 43916312 - 43916165
Alignment:
Q  117 tggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccctattnnnnnnntggcaaaagtggccctccatctctaccccctttt 216  Q
    |||||||||| || ||||  ||||||||||||||||| ||||||||||||  |||||||       ||||||||||| |||   || |||| ||||||||    
T  43916312 tggcttaaacgcatttttcgccccctaagtttgcaaatgttgcaattttggtccctattaaaaaa-tggcaaaagtgaccc---atgtctatcccctttt 43916217  T
Q  217 gtaaaatgtcaattttgactcgatcaaccatacgtggcatgccacctgtgta 268  Q
    | |||| ||||||||||||||  |||| |||| |||||||||||||| ||||    
T  43916216 gcaaaacgtcaattttgactcagtcaatcatatgtggcatgccacctctgta 43916165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 118 - 271
Target Start/End: Original strand, 52142869 - 52143023
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgaccc-ctattnnnnnnntggcaaaagtggccctccatctctaccccctttt 216  Q
    |||||||||  ||||||||||||||||||||| |||||||  ||||||||||| || ||       || |||||||| ||||| || | ||||| |||||    
T  52142869 ggcttaaacatactttttaccccctaagtttgtaaaagttataattttgaccctcttttaaaaaaatgacaaaagtgaccctctatgtttacccgctttt 52142968  T
Q  217 gtaaaatgtcaattttgactcgatcaaccatacgtggcatgccacctgtgtattt 271  Q
    | ||||   |||||||||| |  |||||||||| ||||||||||||| |||||||    
T  52142969 gcaaaaccccaattttgacccagtcaaccatacttggcatgccacctatgtattt 52143023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 120 - 260
Target Start/End: Original strand, 43914909 - 43915049
Alignment:
Q  120 cttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc-tattnnnnnnntggcaaaagtggccctccatctctacccccttttgt 218  Q
    ||||||| |||||||  ||||||||||||||||| |||||||||||| |||| ||||       ||||||||||| ||| |||| |||||||| |||||     
T  43914909 cttaaacgcacttttcgccccctaagtttgcaaaggttgcaattttggccccctattaaaaaaatggcaaaagtgaccccccatgtctacccc-ttttgc 43915007  T
Q  219 aaaatgtcaattttgactcgatcaaccatacgtggcatgcca 260  Q
    |||| ||||||||||||| | |||||  |  |||||||||||    
T  43915008 aaaacgtcaattttgacttggtcaacgttgtgtggcatgcca 43915049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 213 - 275
Target Start/End: Complemental strand, 1075959 - 1075897
Alignment:
Q  213 ttttgtaaaatgtcaattttgactcgatcaaccatacgtggcatgccacctgtgtatttattt 275  Q
    ||||| ||||| |||||||||||||  ||||||||||| |||||||||| |||||||||||||    
T  1075959 ttttgcaaaatctcaattttgactcagtcaaccatacgcggcatgccacatgtgtatttattt 1075897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 187 - 276
Target Start/End: Original strand, 22776572 - 22776661
Alignment:
Q  187 aaaagtggccctccatctctacccccttttgtaaaatgtcaattttgactcgatcaaccatacgtggcatgccacctgtgtatttatttt 276  Q
    ||||||| |||  ||| |||||||||||||| ||||  ||||| |||||||  |||||| || |||||| ||||||||||||||||||||    
T  22776572 aaaagtgacccctcatgtctacccccttttgcaaaacatcaatcttgactcagtcaaccgtatgtggcacgccacctgtgtatttatttt 22776661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 24032033 - 24032081
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttg 166  Q
    ||||||||||||||||| |||| |||||||||||||||| |||||||||    
T  24032033 ggcttaaacccacttttcaccctctaagtttgcaaaagtagcaattttg 24032081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 118 - 244
Target Start/End: Original strand, 30105434 - 30105562
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaatttt-gacccctattnnnnnnntgg-caaaagtggccctccatctctacccccttt 215  Q
    ||||||||| || ||||  ||||||||||||||||| ||||||||||| | ||||||||         | |||||||| ||| |||| ||||||||||||    
T  30105434 ggcttaaacacatttttcgccccctaagtttgcaaaggttgcaatttttgccccctattaaaaataaagacaaaagtgaccccccatgtctacccccttt 30105533  T
Q  216 tgtaaaatgtcaattttgactcgatcaac 244  Q
    || |||| ||||||||||||| |||||||    
T  30105534 tgcaaaacgtcaattttgacttgatcaac 30105562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 128 - 165
Target Start/End: Original strand, 5971096 - 5971133
Alignment:
Q  128 cactttttaccccctaagtttgcaaaagttgcaatttt 165  Q
    |||||||| |||||||||||||||||||||||||||||    
T  5971096 cactttttgccccctaagtttgcaaaagttgcaatttt 5971133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 459
Target Start/End: Original strand, 1075210 - 1075270
Alignment:
Q  399 tttttcccccaattcctttcatctccccttatctttccctcttccatcgtatcacaaccct 459  Q
    ||||||| |||||||||||||||| |||||||||||| ||  |||||||||  ||||||||    
T  1075210 tttttcctccaattcctttcatcttcccttatctttctctaatccatcgtacaacaaccct 1075270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 10920131 - 10920179
Alignment:
Q  51 aattcaaccctctcatctctcattataaaaactcctctcacttgataca 99  Q
    |||||||  |||||||||||||||||||||  |||||||||||||||||    
T  10920131 aattcaatgctctcatctctcattataaaatgtcctctcacttgataca 10920179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 23818267 - 23818315
Alignment:
Q  51 aattcaaccctctcatctctcattataaaaactcctctcacttgataca 99  Q
    |||||||  |||||||||||||||||||||  |||||||||||||||||    
T  23818267 aattcaatgctctcatctctcattataaaatatcctctcacttgataca 23818315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 3929164 - 3929246
Alignment:
Q  28 gtaaagattgatccaagggttacaattcaaccctctcat-ctctcattataaaaactcctctcacttgatacatcttatatata 110  Q
    |||||||||||||||| ||| || |||  | |||||||| |||||||||| || |||||||||| |||||||| ||||||||||    
T  3929164 gtaaagattgatccaatggtcaccatttgatcctctcatcctctcattat-aacactcctctcatttgatacaccttatatata 3929246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 97
Target Start/End: Complemental strand, 23347069 - 23347007
Alignment:
Q  34 attgatccaagggttacaattcaaccctctcatctctcattataaaaactcctctcacttgata 97  Q
    |||||| ||||||||| |||| ||||||||||||||| || ||||||| | |||||||||||||    
T  23347069 attgattcaagggttataatttaaccctctcatctcttataataaaaaat-ctctcacttgata 23347007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 23347517 - 23347588
Alignment:
Q  30 aaagattgatccaagggttacaattcaaccctctcatctctcattataaaaactcctctcacttgatacatc 101  Q
    ||||||||||| ||| || |  ||| ||||||||||||| |||  |||||| ||||||||||||||||||||    
T  23347517 aaagattgatcaaagagtcatgatttaaccctctcatctttcaccataaaatctcctctcacttgatacatc 23347588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 31377731 - 31377677
Alignment:
Q  117 tggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    ||||||||||| |||||| || | |||||||||||||||||| ||||||| ||||    
T  31377731 tggcttaaacctacttttcactctctaagtttgcaaaagttgtaattttggcccc 31377677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 97
Target Start/End: Complemental strand, 36681570 - 36681532
Alignment:
Q  59 cctctcatctctcattataaaaactcctctcacttgata 97  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  36681570 cctctcatctctcactataacaactcctctcacttgata 36681532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 97
Target Start/End: Complemental strand, 51097557 - 51097519
Alignment:
Q  59 cctctcatctctcattataaaaactcctctcacttgata 97  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  51097557 cctctcatctctcattataactactcctctcacttgata 51097519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 276
Target Start/End: Original strand, 16273827 - 16273895
Alignment:
Q  208 cccccttttgtaaaatgtcaattttgactcga-tcaaccatacgtggcatgccacctgtgtatttatttt 276  Q
    |||||||||| |||| ||| |||||||| ||| ||||||||| ||||||||||||||| |||||| ||||    
T  16273827 cccccttttgcaaaacgtcgattttgac-cgagtcaaccatatgtggcatgccacctgggtatttttttt 16273895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 110
Target Start/End: Original strand, 22914697 - 22914745
Alignment:
Q  61 tctcatctctcattataaaaactcctctcacttgatacatcttatatata 110  Q
    |||||||||||||| ||||| |||||||||||||||||| | ||||||||    
T  22914697 tctcatctctcattttaaaa-ctcctctcacttgatacaccctatatata 22914745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 13265589 - 13265545
Alignment:
Q  29 taaagattgatccaagggttacaattcaaccctctcatctctcat 73  Q
    |||||||| |||||| ||| | |||||||||||||||||||||||    
T  13265589 taaagattaatccaaaggtgagaattcaaccctctcatctctcat 13265545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 111
Target Start/End: Complemental strand, 19138913 - 19138833
Alignment:
Q  31 aagattgatccaagggttacaattcaaccctctcatctctcattataaaaactcctctcacttgatacatcttatatataa 111  Q
    ||||| ||||||||||||   ||| ||||||||||||||||| | |||| | | |||||| ||||||||||  ||||||||    
T  19138913 aagatggatccaagggttgtgatttaaccctctcatctctcaatgtaaatattgctctcatttgatacatcccatatataa 19138833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 19790905 - 19790846
Alignment:
Q  38 atccaagggttacaattcaaccctctcatc-tctcattataaaaactcctctcacttgata 97  Q
    |||||||||||| |||| |||||||||| | ||||||| ||||| ||||||||||||||||    
T  19790905 atccaagggttataattaaaccctctcaccctctcattttaaaa-ctcctctcacttgata 19790846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 120 - 171
Target Start/End: Original strand, 43600906 - 43600958
Alignment:
Q  120 cttaaacccactttttacccc-ctaagtttgcaaaagttgcaattttgacccc 171  Q
    |||||||| |||||| ||||  |||||||| ||||||||||||||||||||||    
T  43600906 cttaaacctacttttcacccttctaagtttacaaaagttgcaattttgacccc 43600958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 43602120 - 43602072
Alignment:
Q  117 tggcttaaacccactttttaccccctaagtttgcaaaagttgcaatttt 165  Q
    |||||||||| ||||||| || | ||||||||||||||||| |||||||    
T  43602120 tggcttaaacacacttttcacactctaagtttgcaaaagttacaatttt 43602072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 41)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 118 - 276
Target Start/End: Complemental strand, 26363652 - 26363493
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc-tattnnnnnnntggcaaaagtggccctccatctctaccccctttt 216  Q
    |||| |||| |||||||| |||||||| |||||| |||||||||||||| |||| ||||       ||||||||||| ||| | || |||||||||||||    
T  26363652 ggctaaaacgcactttttgccccctaaatttgcagaagttgcaattttggccccctattaaaaaaatggcaaaagtgacccccaatatctaccccctttt 26363553  T
Q  217 gtaaaatgtcaattttgactcgatcaaccatacgtggcatgccacctgtgtatttatttt 276  Q
    | |||| ||||||||||||||  ||||||||| |||||| ||||||||||||||||||||    
T  26363552 gcaaaacgtcaattttgactcagtcaaccatatgtggcacgccacctgtgtatttatttt 26363493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 39 - 117
Target Start/End: Complemental strand, 6373806 - 6373729
Alignment:
Q  39 tccaagggttacaattcaaccctctcatctctcattataaaaactcctctcacttgatacatcttatatataacaaaat 117  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  6373806 tccaagagttacaactcaaccctctcatctctcattataaaaactcctctcacttgatacaccttat-tataacaaaat 6373729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 118 - 279
Target Start/End: Complemental strand, 39582056 - 39581893
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc--tattnnnnnnntggcaaaagtggccctccatctctacccccttt 215  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||| ||||  | |        ||||||||||| |||||||| | ||||| |||     
T  39582056 ggcttaaacacactttttactccctaagtttgcaaaagttgcaattttggcccccttttaaaaaaaatggcaaaagtgaccctccatgtttaccctcttc 39581957  T
Q  216 tgtaaaatgtcaattttgactcgatcaaccatacgtggcatgccacctgtgtatttattttatt 279  Q
    || ||||   |||||||||| |  |||||||||| ||||||||||||||||||||| |||||||    
T  39581956 tgcaaaaccccaattttgacccagtcaaccatacttggcatgccacctgtgtattttttttatt 39581893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 118 - 271
Target Start/End: Complemental strand, 1192172 - 1192017
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc-tattnnnnnnn-tggcaaaagtggccctccatctctacccccttt 215  Q
    |||||||||| |||||| |||| |||||||||||||||| ||||||||| |||| ||||        ||||||||||| ||| |||| | ||||||||||    
T  1192172 ggcttaaacctacttttcaccctctaagtttgcaaaagtagcaattttggccccctattaaaaaaaatggcaaaagtgaccccccatgtttacccccttt 1192073  T
Q  216 tgtaaaatgtcaattttgactcgatcaaccatacgtggcatgccacctgtgtattt 271  Q
    || ||||  ||||||||||| |  ||||||||| ||||||||||||||||||||||    
T  1192072 tgcaaaagctcaattttgacccagtcaaccatatgtggcatgccacctgtgtattt 1192017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 118 - 271
Target Start/End: Original strand, 36984146 - 36984298
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttga-cccctattnnnnnnntggcaaaagtggccctccatctctaccccctttt 216  Q
    ||||||||| |||||||||||  ||||||||||||||||||||||||||| | ||| ||        |||||||||| ||  |||| | |||| ||||||    
T  36984146 ggcttaaacgcactttttacctactaagtttgcaaaagttgcaattttgatctccttttaaaaaaacggcaaaagtgacc--ccatgtttaccgcctttt 36984243  T
Q  217 gtaaaatgtcaattttgactcgatcaaccatacgtggcatgccacctgtgtattt 271  Q
    | ||||  ||||||||||||| |||||||||| ||| ||||||||||||||||||    
T  36984244 gcaaaacctcaattttgactcaatcaaccatatgtgtcatgccacctgtgtattt 36984298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 118 - 271
Target Start/End: Complemental strand, 41774835 - 41774681
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttga-cccctatt-nnnnnnntggcaaaagtggccctccatctctacccccttt 215  Q
    |||||||||| |||||| |||| |||||||||||||||| |||||||||| ||||||||        ||||||||||| ||| |||| | ||| ||||||    
T  41774835 ggcttaaacctacttttcaccctctaagtttgcaaaagtagcaattttgaccccctattaaaaaaaatggcaaaagtgaccc-ccatatttactcccttt 41774737  T
Q  216 tgtaaaatgtcaattttgactcgatcaaccatacgtggcatgccacctgtgtattt 271  Q
    || ||||  ||||||||||| |  ||||||||| ||||||||||||||||||||||    
T  41774736 tgcaaaagctcaattttgacccagtcaaccatatgtggcatgccacctgtgtattt 41774681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 117 - 267
Target Start/End: Original strand, 23753258 - 23753410
Alignment:
Q  117 tggcttaaacccactttttaccccctaagtttgcaaaagttgcaatttt-gacccctatt-nnnnnnntggcaaaagtggccctccatctctaccccctt 214  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||| | ||||||||        ||||||||||| |   |||| | || ||||||    
T  23753258 tggcttaaacacactttttaccccctaagtttgtaaaagttgcaattttggccccctattaaaaaaaatggcaaaagtgacatcccatatttatcccctt 23753357  T
Q  215 ttgtaaaatgtcaattttgactcgatcaaccatacgtggcatgccacctgtgt 267  Q
    ||| |||| ||||||||||||| |||||| | ||| ||||||||||| |||||    
T  23753358 ttgcaaaacgtcaattttgacttgatcaagcctacatggcatgccacatgtgt 23753410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 120 - 175
Target Start/End: Original strand, 35562246 - 35562301
Alignment:
Q  120 cttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccctatt 175  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  35562246 cttaaacacactttttaccctctaagtttgcaaaagttgcaattttgacccctatt 35562301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 118 - 175
Target Start/End: Complemental strand, 14055510 - 14055453
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccctatt 175  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||    
T  14055510 ggcttaaacacactttctaccccctaagtttgcaaaagttgcaattttggcccctatt 14055453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 45021705 - 45021652
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  45021705 ggcttaaactcactttttaccccctaagtttgtaaaagttgcaattttgacccc 45021652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 118 - 276
Target Start/End: Complemental strand, 4378097 - 4377939
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccct-attnnnnnnntggcaaaagtggccctccatctctaccccctttt 216  Q
    |||||||||  | ||||| ||||||||||||  ||| |||| ||||||| ||||| |||       ||||||||||| ||  |||| |||||||| ||||    
T  4378097 ggcttaaacatattttttgccccctaagtttataaaggttgtaattttggccccttattaaaaaaatggcaaaagtgacctcccatgtctacccc-tttt 4377999  T
Q  217 gtaaaatgtcaattttgactcgatcaaccatacgtggcatgccacctgtgtatttatttt 276  Q
    | |||| |||||||| ||||||||||||  || |||||| ||||||||||||||||||||    
T  4377998 gcaaaacgtcaatttcgactcgatcaactgtatgtggcacgccacctgtgtatttatttt 4377939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 14054118 - 14054175
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccctatt 175  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||| | ||||||    
T  14054118 ggcttaaacacactttttacctcctaagtttgcaaaagttgcaattttggctcctatt 14054175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 39689043 - 39688990
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    |||||||||||| |||| ||||||||| ||||||||||||||||||||||||||    
T  39689043 ggcttaaacccatttttgaccccctaaatttgcaaaagttgcaattttgacccc 39688990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 118 - 167
Target Start/End: Original strand, 44296720 - 44296769
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttga 167  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  44296720 ggcttaaacgcactttttaccccttaagtttgcaaaagttgcaattttga 44296769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 39688342 - 39688390
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttg 166  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  39688342 ggcttaaacccacttttgaccccttaagtttgcaaaagttgcaattttg 39688390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 118 - 165
Target Start/End: Complemental strand, 28301706 - 28301659
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaatttt 165  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  28301706 ggcttaaacgcactttttacctcctaagtttgcaaaagttgcaatttt 28301659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 106 - 165
Target Start/End: Complemental strand, 36985370 - 36985311
Alignment:
Q  106 atataacaaaatggcttaaacccactttttaccccctaagtttgcaaaagttgcaatttt 165  Q
    |||||| |||| |||||||||| |||||| |||| |||||||||||||||||||||||||    
T  36985370 atataaaaaaaaggcttaaacctacttttcaccctctaagtttgcaaaagttgcaatttt 36985311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 118 - 169
Target Start/End: Original strand, 41944355 - 41944406
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacc 169  Q
    ||||||||  |||||||||||| |||||||||||||||||||||||||||||    
T  41944355 ggcttaaattcactttttaccctctaagtttgcaaaagttgcaattttgacc 41944406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 118 - 271
Target Start/End: Original strand, 45020585 - 45020739
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaatttt-gacccctattnnnnnnn-tggcaaaagtggccctccatctctacccccttt 215  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||| | ||||||||        |||||||||   ||| |||| | | ||||||||    
T  45020585 ggcttaaactcactttttaccctctaagtttgcaaaagttgcaatttttgccccctattaaaaaaaatggcaaaagctaccc-ccatgttttcccccttt 45020683  T
Q  216 tgtaaaatgtcaattttgactcga-tcaaccatacgtggcatgccacctgtgtattt 271  Q
    || |||| ||| |||||||| ||| ||||||||| ||||||||||||||| ||||||    
T  45020684 tgcaaaacgtcgattttgac-cgagtcaaccatatgtggcatgccacctgggtattt 45020739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 118 - 167
Target Start/End: Original strand, 6571326 - 6571375
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttga 167  Q
    ||||||||| ||||||||| ||| ||||||||||||||||||||||||||    
T  6571326 ggcttaaactcactttttatcccttaagtttgcaaaagttgcaattttga 6571375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 26830325 - 26830378
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    ||||||||| |||||||||||||||| ||||||||| || ||||||||||||||    
T  26830325 ggcttaaacacactttttaccccctaggtttgcaaacgtagcaattttgacccc 26830378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 26831500 - 26831447
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    ||||||||| ||||||||||||||||||||||||||||| | ||||||| ||||    
T  26831500 ggcttaaacacactttttaccccctaagtttgcaaaagtagtaattttggcccc 26831447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 45519548 - 45519495
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    ||||||||| |||||||||||| |||| ||||||||||||||||||||| ||||    
T  45519548 ggcttaaacgcactttttaccctctaactttgcaaaagttgcaattttggcccc 45519495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 22255574 - 22255622
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttg 166  Q
    ||||||||| |||||||  ||||||||||||||||||||||||||||||    
T  22255574 ggcttaaacgcacttttcgccccctaagtttgcaaaagttgcaattttg 22255622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 39580795 - 39580845
Alignment:
Q  121 ttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    |||||| ||||||||||||| ||||||||||||||||  ||||||||||||    
T  39580795 ttaaactcactttttaccccttaagtttgcaaaagttataattttgacccc 39580845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 1190968 - 1191017
Alignment:
Q  117 tggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttg 166  Q
    |||||||||| ||||||| |||| |||||||||||||||| |||||||||    
T  1190968 tggcttaaactcacttttcaccctctaagtttgcaaaagtagcaattttg 1191017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 6572497 - 6572444
Alignment:
Q  113 aaaatggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttg 166  Q
    |||| |||||||||||| |||||||||| || ||||||||||||| ||||||||    
T  6572497 aaaaaggcttaaacccagtttttaccccttaggtttgcaaaagttacaattttg 6572444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 44297872 - 44297823
Alignment:
Q  117 tggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttg 166  Q
    |||||||||| || |||| |||||||||||||| ||||||||||||||||    
T  44297872 tggcttaaacgcatttttcaccccctaagtttgtaaaagttgcaattttg 44297823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 45518168 - 45518221
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    ||||||||| ||||||||| || |||| |||||| |||||||||||||||||||    
T  45518168 ggcttaaacacactttttatcctctaactttgcagaagttgcaattttgacccc 45518221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 5664412 - 5664345
Alignment:
Q  31 aagattgatccaagggttacaattcaaccctctcatctctcattataaaaactcctctcacttgataca 99  Q
    |||||| |||||| |||||  ||||||||||||||||| |||  |||||| ||||||||||||||||||    
T  5664412 aagattaatccaatggttaggattcaaccctctcatctttcacaataaaa-ctcctctcacttgataca 5664345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 23410114 - 23410074
Alignment:
Q  121 ttaaacccactttttaccccctaagtttgcaaaagttgcaa 161  Q
    ||||| |||||||||||| ||||||||||||||||||||||    
T  23410114 ttaaatccactttttacctcctaagtttgcaaaagttgcaa 23410074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 35563543 - 35563495
Alignment:
Q  117 tggcttaaacccactttttaccccctaagtttgcaaaagttgcaatttt 165  Q
    |||||||||| || ||| ||| |||||||||||||||||||||||||||    
T  35563543 tggcttaaacgcattttctactccctaagtttgcaaaagttgcaatttt 35563495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 44066786 - 44066734
Alignment:
Q  119 gcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    |||||||| ||| ||||| ||| ||||||||||||||||| ||||||||||||    
T  44066786 gcttaaacacaccttttatcccttaagtttgcaaaagttgtaattttgacccc 44066734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 110
Target Start/End: Complemental strand, 16664677 - 16664626
Alignment:
Q  59 cctctcatctctcattataaaaactcctctcacttgatacatcttatatata 110  Q
    ||||||| ||||||||||||||| |||||| ||||||||| || ||||||||    
T  16664677 cctctcacctctcattataaaaagtcctctaacttgatacgtcatatatata 16664626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 165
Target Start/End: Original strand, 28301344 - 28301391
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaatttt 165  Q
    ||||||||| ||||||||||| |||| ||||| |||||||||||||||    
T  28301344 ggcttaaacacactttttacctcctatgtttgaaaaagttgcaatttt 28301391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 79
Target Start/End: Complemental strand, 32318115 - 32318068
Alignment:
Q  32 agattgatccaagggttacaattcaaccctctcatctctcattataaa 79  Q
    |||||||||||||||||  |||| ||||||||||||||||||| ||||    
T  32318115 agattgatccaagggttgtaatttaaccctctcatctctcattttaaa 32318068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 164
Target Start/End: Complemental strand, 23754433 - 23754387
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattt 164  Q
    |||||||||  |||||| |||| ||||||||||||||||||||||||    
T  23754433 ggcttaaacgtacttttaaccctctaagtttgcaaaagttgcaattt 23754387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 97
Target Start/End: Original strand, 37550947 - 37550985
Alignment:
Q  59 cctctcatctctcattataaaaactcctctcacttgata 97  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  37550947 cctctcatctctcactataacaactcctctcacttgata 37550985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 110
Target Start/End: Original strand, 37551671 - 37551753
Alignment:
Q  25 atggtaaagattgatccaagggttacaattcaaccctctcatctctcattataaaaactcctctcacttgatacatcttatatata 110  Q
    ||||||| ||||||||||| || ||  ||| ||||||||||||||  ||| ||||| |||||||||||||||||| | ||||||||    
T  37551671 atggtaaggattgatccaaaggctatgatttaaccctctcatctc--attttaaaa-ctcctctcacttgatacaccctatatata 37551753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 97
Target Start/End: Complemental strand, 36228579 - 36228511
Alignment:
Q  29 taaagattgatccaagggttacaattcaaccctctcatctctcattataaaaactcctctcacttgata 97  Q
    |||||||||||| |||||||   |||  |||||||||||||||||| |||||  |||||| ||||||||    
T  36228579 taaagattgatctaagggttgtgatttcaccctctcatctctcattttaaaaggtcctcttacttgata 36228511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 204 - 268
Target Start/End: Original strand, 44065573 - 44065636
Alignment:
Q  204 tctacccccttttgtaaaatgtcaattttgactcgatcaaccatacgtggcatgccacctgtgta 268  Q
    |||| ||||||||| |||| |||||||||||||| | ||| |||| |||||||||||| ||||||    
T  44065573 tctatccccttttgcaaaacgtcaattttgactc-aacaaacatatgtggcatgccacatgtgta 44065636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 9e-28; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 118 - 275
Target Start/End: Complemental strand, 7314307 - 7314148
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc--tattnnnnnnntggcaaaagtggccctccatctctacccccttt 215  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||  | |        ||||||||||| |||||||| | || |||||||    
T  7314307 ggcttaaacacactttttaccccctaagtttgcaaaagttgcaattttggcccccttttaaaaaaaatggcaaaagtgaccctccatgtttatccccttt 7314208  T
Q  216 tgtaaaatgtcaattttgactcgatcaaccatacgtggcatgccacctgtgtatttattt 275  Q
    |  ||||  ||||||||||| |  |||||||||| |||||||||||||||||||||||||    
T  7314207 tacaaaacctcaattttgacccagtcaaccatacttggcatgccacctgtgtatttattt 7314148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 118 - 274
Target Start/End: Complemental strand, 16957319 - 16957161
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaatttt-gacccctatt-nnnnnnntggcaaaagtggccctccatctctacccccttt 215  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||| | ||||||||        |||||||||||  || | || | ||||||||||    
T  16957319 ggctaaaacgcactttttaccccctaagtttgcaaaagttgcaattttggccccctattaaaaaaaatggcaaaagtgatcccctatgtttacccccttt 16957220  T
Q  216 tgtaaaatgtcaattttgactcgatcaaccatacgtggcatgccacctgtgtatttatt 274  Q
    || |||| |||||||||||| |  ||||||  | |||||| ||||||||||||||||||    
T  16957219 tgcaaaacgtcaattttgacccagtcaaccccatgtggcacgccacctgtgtatttatt 16957161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 118 - 268
Target Start/End: Original strand, 42337069 - 42337221
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgac-ccctatt-nnnnnnntggcaaaagtggccctccatctctacccccttt 215  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||        |||||||||   ||| |||| | | ||||||||    
T  42337069 ggcttaaactcactttttaccccctaagtttgcaaaagttgcaattttggcaccctattaaaaaaaatggcaaaagctaccccccatgttttcccccttt 42337168  T
Q  216 tgtaaaatgtcaattttgactcga-tcaaccatacgtggcatgccacctgtgta 268  Q
    || |||||| |||||||||| ||| ||||||||| |||||||||||| ||||||    
T  42337169 tgcaaaatgccaattttgac-cgagtcaaccatatgtggcatgccacatgtgta 42337221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 118 - 165
Target Start/End: Complemental strand, 35960260 - 35960213
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaatttt 165  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  35960260 ggcttaaacccactttttaccccctaattttgcaaaagttgcaatttt 35960213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 42338209 - 42338160
Alignment:
Q  117 tggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttg 166  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  42338209 tggcttaaactcactttttgccccctaagtttgcaaaagttgcaattttg 42338160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 12385547 - 12385488
Alignment:
Q  116 atggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccctatt 175  Q
    ||||||||||| ||||||||||||||||||||| |||||||||  |||||| ||||||||    
T  12385547 atggcttaaacgcactttttaccccctaagtttacaaaagttgacattttggcccctatt 12385488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 117 - 171
Target Start/End: Original strand, 7313070 - 7313124
Alignment:
Q  117 tggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    |||||||||| || |||||||||| ||||||||||||||||||||||||| ||||    
T  7313070 tggcttaaactcattttttaccccttaagtttgcaaaagttgcaattttggcccc 7313124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 40319551 - 40319604
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    ||||||||| |||||||||||| |||| ||||||||||||||||||||| ||||    
T  40319551 ggcttaaacgcactttttaccctctaactttgcaaaagttgcaattttggcccc 40319604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 17352890 - 17352938
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttg 166  Q
    ||||||||| ||||||||| ||||||||||||||||||||| |||||||    
T  17352890 ggcttaaacacactttttatcccctaagtttgcaaaagttgtaattttg 17352938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 40658999 - 40659051
Alignment:
Q  113 aaaatggcttaaacccactttttaccccctaagtttgcaaaagttgcaatttt 165  Q
    |||| |||||||||  |||||||||||||||||||| ||||||||||||||||    
T  40658999 aaaaaggcttaaacgtactttttaccccctaagtttacaaaagttgcaatttt 40659051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 100
Target Start/End: Original strand, 29065406 - 29065473
Alignment:
Q  33 gattgatccaagggttacaattcaaccctctcatctctcattataaaaactcctctcacttgatacat 100  Q
    ||||||||||||||||   ||| ||||||||||  ||||||| ||| |||||||||||||||||||||    
T  29065406 gattgatccaagggttgtgatttaaccctctcacttctcattttaagaactcctctcacttgatacat 29065473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 118 - 165
Target Start/End: Original strand, 46469141 - 46469188
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaatttt 165  Q
    ||||||||| |||||| |||||| ||||||||||||||||||||||||    
T  46469141 ggcttaaacacactttctaccccttaagtttgcaaaagttgcaatttt 46469188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 43103873 - 43103823
Alignment:
Q  60 ctctcatctctcattataaaaactcctctcacttgatacatcttatatata 110  Q
    |||||||||||||||||||||  ||||||||||||||||| ||| ||||||    
T  43103873 ctctcatctctcattataaaatgtcctctcacttgatacaccttctatata 43103823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 12384093 - 12384141
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttg 166  Q
    ||||||||| |||| |||||||||||||||||||||||| | |||||||    
T  12384093 ggcttaaacgcactatttaccccctaagtttgcaaaagtagtaattttg 12384141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 35959081 - 35959129
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttg 166  Q
    ||||||||| |||||||  ||||||||||||||||| ||||||||||||    
T  35959081 ggcttaaactcacttttcgccccctaagtttgcaaaggttgcaattttg 35959129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 276
Target Start/End: Original strand, 37627558 - 37627622
Alignment:
Q  212 cttttgtaaaatgtcaattttgactcgatcaaccatacgtggcatgccacctgtgtatttatttt 276  Q
    |||||| |||| ||||||||||||||  |||||| || ||||||  |||||||||||||||||||    
T  37627558 cttttgcaaaacgtcaattttgactcagtcaaccgtatgtggcacaccacctgtgtatttatttt 37627622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 97
Target Start/End: Original strand, 41115495 - 41115533
Alignment:
Q  59 cctctcatctctcattataaaaactcctctcacttgata 97  Q
    |||||||||||||||| ||| ||||||||||||||||||    
T  41115495 cctctcatctctcattttaacaactcctctcacttgata 41115533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 168
Target Start/End: Complemental strand, 47509002 - 47508952
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgac 168  Q
    |||||||| ||| |||||| ||  |||||||||||||||||||||||||||    
T  47509002 ggcttaaatccattttttatcctttaagtttgcaaaagttgcaattttgac 47508952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 17353931 - 17353878
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    |||||||||  ||||||||| | ||||||||||||||||| |||||||| ||||    
T  17353931 ggcttaaacgtactttttactctctaagtttgcaaaagttacaattttggcccc 17353878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 40322610 - 40322557
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    ||||||||| || ||||||||| |||| |||| |||||||||||||||| ||||    
T  40322610 ggcttaaacgcattttttaccctctaactttgtaaaagttgcaattttggcccc 40322557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 15894601 - 15894657
Alignment:
Q  25 atggtaaagattgatccaagggttacaattcaaccctctcatctctcattataaaaa 81  Q
    |||||||||||| ||| ||||||||  |||||||||||||| ||||||  |||||||    
T  15894601 atggtaaagattaatctaagggttaggattcaaccctctcacctctcacgataaaaa 15894657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 37628606 - 37628554
Alignment:
Q  119 gcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    |||||||  |||||||||  |||||||||||||||||||| ||||||| ||||    
T  37628606 gcttaaattcactttttaatccctaagtttgcaaaagttgtaattttggcccc 37628554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 40659365 - 40659318
Alignment:
Q  117 tggcttaaacccactttttaccccctaagtttgcaaaagttgcaatttt 165  Q
    |||||||||| || |||||||| |||| |||||||||||||||||||||    
T  40659365 tggcttaaacaca-tttttacctcctatgtttgcaaaagttgcaatttt 40659318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 9e-28; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 118 - 276
Target Start/End: Original strand, 20891806 - 20891966
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc-tattnnnnnnn-tggcaaaagtggccctccatctctacccccttt 215  Q
    |||| |||| |||||||| ||||||||||||||| |||||||||||||| |||| ||||        ||||||||||| ||| |||| ||||||||||||    
T  20891806 ggctaaaacacactttttgccccctaagtttgcagaagttgcaattttggccccctattaaaaaaaatggcaaaagtgaccccccatgtctacccccttt 20891905  T
Q  216 tgtaaaatgtcaattttgactcgatcaaccatacgtggcatgccacctgtgtatttatttt 276  Q
    || |||| ||||||||||||||  ||||||||| |||||| ||||||| ||||||||||||    
T  20891906 tgcaaaacgtcaattttgactcagtcaaccatatgtggcacgccacctatgtatttatttt 20891966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 118 - 268
Target Start/End: Original strand, 15976612 - 15976764
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgac-ccctatt-nnnnnnntggcaaaagtggccctccatctctacccccttt 215  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||        |||||||||   ||| |||| | | ||||||||    
T  15976612 ggcttaaactcactttttaccccctaagtttgcaaaagttgcaattttgacaccctattaaaaaaaatggcaaaagctaccccccatgttttcccccttt 15976711  T
Q  216 tgtaaaatgtcaattttgactcga-tcaaccatacgtggcatgccacctgtgta 268  Q
    || ||||||||||||||||| ||| ||||||||| |||||||||||| ||||||    
T  15976712 tgcaaaatgtcaattttgac-cgagtcaaccatatgtggcatgccacatgtgta 15976764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 117 - 271
Target Start/End: Original strand, 26444485 - 26444641
Alignment:
Q  117 tggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc-tattnnnnnnn-tggcaaaagtggccctccatctctaccccctt 214  Q
    ||||||||||| |||||| |||| |||||||||||||||| ||||||||| |||| ||||        ||||||||||| ||| |||| | |||| ||||    
T  26444485 tggcttaaacctacttttcaccctctaagtttgcaaaagtagcaattttggccccctattaaaaaaaatggcaaaagtgaccccccatgtttacctcctt 26444584  T
Q  215 ttgtaaaatgtcaattttgactcgatcaaccatacgtggcatgccacctgtgtattt 271  Q
    ||| ||||  ||||||||||| |  ||||||||| ||||||||||||||||| ||||    
T  26444585 ttgcaaaagctcaattttgacccagtcaaccatatgtggcatgccacctgtgcattt 26444641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 15981076 - 15981023
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  15981076 ggcttaaactcactttttaccccctaagtttgcaaaagttgcaattttggcccc 15981023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 20584033 - 20583979
Alignment:
Q  117 tggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    ||||||||||  ||||||||||| |||||||||||||||||||||||||||||||    
T  20584033 tggcttaaacgtactttttaccctctaagtttgcaaaagttgcaattttgacccc 20583979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 118 - 175
Target Start/End: Complemental strand, 14456249 - 14456192
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccctatt 175  Q
    ||||||||| |||||||||||||| ||||||||||||||| |||||||| ||||||||    
T  14456249 ggcttaaacgcactttttacccccaaagtttgcaaaagttacaattttggcccctatt 14456192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 20583017 - 20583070
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    ||||||||| ||||||||| |||||||||||| |||||||||||||||||||||    
T  20583017 ggcttaaacacactttttatcccctaagtttggaaaagttgcaattttgacccc 20583070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 26444915 - 26444861
Alignment:
Q  117 tggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    |||||||||||||||||| |||| |||||||||||||||| |||||||| |||||    
T  26444915 tggcttaaacccacttttcaccctctaagtttgcaaaagtagcaattttaacccc 26444861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 114 - 167
Target Start/End: Complemental strand, 3489421 - 3489368
Alignment:
Q  114 aaatggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttga 167  Q
    ||||||||||||| |||||||||||||||||||||| |||||| | ||||||||    
T  3489421 aaatggcttaaacgcactttttaccccctaagtttgtaaaagtaggaattttga 3489368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 30373072 - 30373135
Alignment:
Q  31 aagattgatccaagggttacaattcaaccctctcatctctcattataaaaactcctctcacttga 95  Q
    ||||||||||||||||||  |||| ||| |||||||||||||| |||||||| ||||||||||||    
T  30373072 aagattgatccaagggttgtaatttaacactctcatctctcataataaaaac-cctctcacttga 30373135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 646692 - 646736
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaat 162  Q
    ||||||||| ||||||||||||| || ||||||||||||||||||    
T  646692 ggcttaaactcactttttaccccttatgtttgcaaaagttgcaat 646736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 3488034 - 3488082
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttg 166  Q
    ||||||||| ||||||||| ||||||||||||||||||| | |||||||    
T  3488034 ggcttaaacgcactttttatcccctaagtttgcaaaagtagaaattttg 3488082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 97
Target Start/End: Complemental strand, 22046470 - 22046432
Alignment:
Q  59 cctctcatctctcattataaaaactcctctcacttgata 97  Q
    |||||||||||||||| ||| ||||||||||||||||||    
T  22046470 cctctcatctctcattttaacaactcctctcacttgata 22046432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 97
Target Start/End: Complemental strand, 22058878 - 22058840
Alignment:
Q  59 cctctcatctctcattataaaaactcctctcacttgata 97  Q
    |||||||||||||||| ||| ||||||||||||||||||    
T  22058878 cctctcatctctcattttaacaactcctctcacttgata 22058840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 8173026 - 8172957
Alignment:
Q  28 gtaaagattgatccaagggttacaattcaaccctctcatctctcattataaaaactcctctcacttgata 97  Q
    ||||||||||||||||  |||| ||||  ||||||||||||||||  |||||||   |||||||||||||    
T  8173026 gtaaagattgatccaaaagttataatttcaccctctcatctctcaccataaaaatctctctcacttgata 8172957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 646871 - 646828
Alignment:
Q  121 ttaaacccactttttaccccctaagtttgcaaaagttgcaatttt 165  Q
    |||||| ||||||||||||  ||||||||||||||||||||||||    
T  646871 ttaaacacactttttaccct-taagtttgcaaaagttgcaatttt 646828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 4370898 - 4370946
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttg 166  Q
    ||||||||| |||| || ||||||||||||||||||||| || ||||||    
T  4370898 ggcttaaacgcactattcaccccctaagtttgcaaaagtagcgattttg 4370946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 123 - 171
Target Start/End: Original strand, 15888976 - 15889024
Alignment:
Q  123 aaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    |||| ||| |||| ||||||||||||||||| |||||||||||| ||||    
T  15888976 aaacgcacgttttgccccctaagtttgcaaatgttgcaattttggcccc 15889024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 118 - 274
Target Start/End: Complemental strand, 10616146 - 10615988
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc-tattnnnnnnn-tggcaaaagtggccctccatctctacccccttt 215  Q
    ||||||||| |||||| |||||||||| |||||||||||||||||||||||||| ||||        ||||||||||| ||  |||| ||||||||||||    
T  10616146 ggcttaaacacactttctaccccctaaatttgcaaaagttgcaattttgaccccctattaaaaaaaatggcaaaagtgacctcccatgtctacccccttt 10616047  T
Q  216 tgtaaaatgtcaattttgactcgatcaaccatacgtggcatgccacctgtgtatttatt 274  Q
    || |||| |||||||||||||   ||||||||| |||||| |||||| |||||||||||    
T  10616046 tgcaaaacgtcaattttgactaagtcaaccatatgtggcacgccacccgtgtatttatt 10615988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 128 - 276
Target Start/End: Complemental strand, 1961218 - 1961068
Alignment:
Q  128 cactttttaccccctaagtttgcaaaagttgcaattttgacccc-tattnnnnnnn-tggcaaaagtggccctccatctctacccccttttgtaaaatgt 225  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||        |||||||||||  || | || |||||||| ||||| |||| ||    
T  1961218 cactttttaccccctaagtttgcaaaagttgcaattttggccccctattaaaaaaaatggcaaaagtgatcccctatgtctacccctttttgcaaaacgt 1961119  T
Q  226 caattttgactcgatcaaccatacgtggcatgccacctgtgtatttatttt 276  Q
    ||||||||||||  |||||| || |||||| ||||||||||||||||||||    
T  1961118 caattttgactcagtcaaccctatgtggcacgccacctgtgtatttatttt 1961068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 119 - 275
Target Start/End: Original strand, 6047064 - 6047221
Alignment:
Q  119 gcttaaacccactttttaccccctaagtttgcaaaagttgcaatttt-gacccctatt-nnnnnnntggcaaaagtggccctccatctctaccccctttt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||        |||||||| || ||    || |||| ||||||||    
T  6047064 gcttaaacccactttttaccccctaagtttgcaaaagttgcaattttggccccctattaaaaaaaatggcaaaaatgacctcttatgtcta-cccctttt 6047162  T
Q  217 gtaaaatgtcaattttgactcgatcaaccatacgtggcatgccacctgtgtatttattt 275  Q
    | |||| ||||||||||||||  |||||| || ||||||||||||||||||||||||||    
T  6047163 gcaaaacgtcaattttgactcagtcaaccgtatgtggcatgccacctgtgtatttattt 6047221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 417 - 477
Target Start/End: Complemental strand, 6047758 - 6047698
Alignment:
Q  417 tcatctccccttatctttccctcttccatcgtatcacaaccctttatctcaattcttctca 477  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6047758 tcatctccccttatctttccctcttccatcgtatcacaacccttcatctcaattcttctca 6047698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 119 - 276
Target Start/End: Original strand, 46170300 - 46170456
Alignment:
Q  119 gcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccctattnnnnnnn-tggcaaaagtggccctccatctctacccccttttg 217  Q
    |||||||||||||||||||| |||||||||||  ||||||||||||||  |||||||        ||||||||||| |||  ||| ||||||| ||||||    
T  46170300 gcttaaacccactttttacctcctaagtttgcggaagttgcaattttggtccctattaaaaaaaatggcaaaagtgaccc--catgtctaccctcttttg 46170397  T
Q  218 taaaatgtcaattttgactcgatcaaccatacgtggcatgccacctgtgtatttatttt 276  Q
     |||| ||||||||||||||  |||||| || |||||||| ||| ||||||||||||||    
T  46170398 caaaacgtcaattttgactcagtcaaccgtatgtggcatgtcacttgtgtatttatttt 46170456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 118 - 274
Target Start/End: Complemental strand, 2421028 - 2420872
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccct-attnnnnnnntggcaaaagtggccctccatctctaccccctttt 216  Q
    ||||||||| |||||| |||||  |||||||||||||||||||||||| |||||| |||        || ||||||| ||| |||| |||||||||||||    
T  2421028 ggcttaaacacactttctaccctttaagtttgcaaaagttgcaattttaaccccttattaaaaaaaaggtaaaagtgaccccccatgtctaccccctttt 2420929  T
Q  217 gtaaaatgtcaattttgactcgatcaaccatacgtggcatgccacctgtgtatttatt 274  Q
    | | | ||||||||||||||   ||||||||| |||||| ||||||||||||||||||    
T  2420928 gcata-tgtcaattttgactaagtcaaccatatgtggcacgccacctgtgtatttatt 2420872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 56113814 - 56113760
Alignment:
Q  117 tggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  56113814 tggcttaaactcactttttaccccctaagtttgcaaaagttgcaattttggcccc 56113760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 118 - 165
Target Start/End: Original strand, 56112695 - 56112742
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaatttt 165  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  56112695 ggcttaaactcactttttaccccctaagtttgcaaaagttgcaatttt 56112742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 22812633 - 22812691
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttga-cccctatt 175  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||    
T  22812633 ggcttaaacccacttttgaccccttaagtttgcaaaagttgcaattttgatcccctatt 22812691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 118 - 168
Target Start/End: Original strand, 40872955 - 40873005
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgac 168  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  40872955 ggcttaaacccacttttcaccccctaagtttgcaaaagttgtaattttgac 40873005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 18705451 - 18705398
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    ||||||||| |||| |||||||||||||||||||||||| ||||||||||||||    
T  18705451 ggcttaaacgcactatttaccccctaagtttgcaaaagtagcaattttgacccc 18705398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 49700775 - 49700727
Alignment:
Q  117 tggcttaaacccactttttaccccctaagtttgcaaaagttgcaatttt 165  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||||    
T  49700775 tggcttaaacacactttttaccccctatgtttgcaaaagttgcaatttt 49700727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 118 - 165
Target Start/End: Original strand, 34155898 - 34155945
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaatttt 165  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  34155898 ggcttaaacacactttttaccccctaagtttacaaaagttgcaatttt 34155945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 120 - 171
Target Start/End: Complemental strand, 52035206 - 52035155
Alignment:
Q  120 cttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||| ||||    
T  52035206 cttaaacccactttttaccccttaaatttgcaaaagttgcaattttggcccc 52035155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 50183265 - 50183196
Alignment:
Q  28 gtaaagattgatccaagggttacaattcaaccctctcatctctcattataaaaactcctctcacttgata 97  Q
    ||||||||| ||||||||| ||  |||||||||||||| ||||||| |||||||  ||||||||||||||    
T  50183265 gtaaagattaatccaagggctaggattcaaccctctcacctctcataataaaaagccctctcacttgata 50183196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 22813345 - 22813297
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttg 166  Q
    ||||||||||||||||| ||| | |||||||||||||||||||||||||    
T  22813345 ggcttaaacccacttttgacctcttaagtttgcaaaagttgcaattttg 22813297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 271
Target Start/End: Original strand, 40841995 - 40842148
Alignment:
Q  120 cttaaacccactttttaccccctaagtttgcaaaagttgcaatttt-gacccctatt-nnnnnnntggcaaaagtggccctccatctctacccccttttg 217  Q
    ||||||| ||||||| |||| ||||||||||||||||||||||||| | ||||| ||        ||||||||||| ||| | || | |||||| |||||    
T  40841995 cttaaacacacttttcaccctctaagtttgcaaaagttgcaattttggtccccttttaaaaaaaatggcaaaagtgaccccctatgtttacccctttttg 40842094  T
Q  218 taaaatgtcaattttgactcgatcaaccatacgtggcatgccacctgtgtattt 271  Q
     ||||  |||||||||||||  ||||| ||| ||| |||||||||| |||||||    
T  40842095 caaaacctcaattttgactcagtcaactatatgtgtcatgccacctatgtattt 40842148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 46577576 - 46577504
Alignment:
Q  25 atggtaaagattgatccaagggttacaattcaaccctctcatctctcattataaaaactcctctcacttgata 97  Q
    |||||||||||| ||| ||||||||  |||||||||||||| ||||||| |||||||   |||||||||||||    
T  46577576 atggtaaagattaatctaagggttaggattcaaccctctcacctctcataataaaaagcactctcacttgata 46577504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 116 - 171
Target Start/End: Original strand, 34369662 - 34369717
Alignment:
Q  116 atggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    |||||| |||| |||||||| |||||||||||||||||||||| |||||| |||||    
T  34369662 atggctaaaacgcactttttgccccctaagtttgcaaaagttgtaatttttacccc 34369717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 100
Target Start/End: Complemental strand, 49574142 - 49574075
Alignment:
Q  33 gattgatccaagggttacaattcaaccctctcatctctcattataaaaactcctctcacttgatacat 100  Q
    |||||||| |||||||   ||| |||||||||| |||||||| ||| |||||||||||||||||||||    
T  49574142 gattgatctaagggttgtgatttaaccctctcacctctcattttaagaactcctctcacttgatacat 49574075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 120 - 171
Target Start/End: Original strand, 52034154 - 52034205
Alignment:
Q  120 cttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    ||||||||||||||||| ||| |||||||||||||| |||||||||| ||||    
T  52034154 cttaaacccactttttatcccttaagtttgcaaaagctgcaattttggcccc 52034205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 166
Target Start/End: Complemental strand, 40874104 - 40874066
Alignment:
Q  128 cactttttaccccctaagtttgcaaaagttgcaattttg 166  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  40874104 cacttttcaccccctaagtttgcaaaagttgcaattttg 40874066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 10614803 - 10614856
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    ||||||||| ||| |||| ||| |||||||||||||||||||||||||| ||||    
T  10614803 ggcttaaacgcacattttgccctctaagtttgcaaaagttgcaattttggcccc 10614856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 110
Target Start/End: Complemental strand, 11380352 - 11380272
Alignment:
Q  29 taaagattgatccaagggttacaattcaaccctctcatctctcattataaaaactcctctcacttgatacatcttatatata 110  Q
    |||||||| ||| |||||  |||||| ||| ||||||||||||||||| |||| |||||||||||||||  || ||||||||    
T  11380352 taaagattaatctaagggccacaattgaacactctcatctctcattat-aaaagtcctctcacttgatatgtcctatatata 11380272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 18703217 - 18703266
Alignment:
Q  118 ggcttaaacccactttttacccc-ctaagtttgcaaaagttgcaattttg 166  Q
    ||||||||| ||||||||||||| ||||||||||||| ||||||||||||    
T  18703217 ggcttaaacacactttttacccccctaagtttgcaaacgttgcaattttg 18703266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 18704467 - 18704414
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    ||||||||| |||| |||||||||||| ||||||||||| ||||||||| ||||    
T  18704467 ggcttaaacgcactatttaccccctaattttgcaaaagtagcaattttggcccc 18704414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 1960895 - 1960943
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttg 166  Q
    |||| |||| ||||||||||||  |||||||||||||||||||||||||    
T  1960895 ggctaaaacgcactttttacccattaagtttgcaaaagttgcaattttg 1960943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 6353720 - 6353657
Alignment:
Q  31 aagattgatccaagggttacaattcaaccctctcatctctcattataaaaactcctctcacttga 95  Q
    ||||||||||||||||||| || | ||| |||||||||||||| || ||||| ||||||||||||    
T  6353720 aagattgatccaagggttataacttaacactctcatctctcataatgaaaac-cctctcacttga 6353657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 39702718 - 39702666
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgaccc 170  Q
    |||| |||| |||||||| |||  |||||||||||||||||||||||||||||    
T  39702718 ggctaaaacgcactttttgcccgttaagtttgcaaaagttgcaattttgaccc 39702666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 268
Target Start/End: Complemental strand, 31183902 - 31183820
Alignment:
Q  185 gcaaaagtggccctccatctctacccccttttgtaaaatgtcaattttgactcgatcaaccatacgtggcatgccacctgtgta 268  Q
    ||||||||| ||| |||| | |||||||||||| ||||  ||||||||||| |  |||||||||| ||||||||||| ||||||    
T  31183902 gcaaaagtgaccc-ccatgtttacccccttttgcaaaacatcaattttgacccagtcaaccatacttggcatgccacttgtgta 31183820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 156
Target Start/End: Complemental strand, 31183934 - 31183895
Alignment:
Q  117 tggcttaaacccactttttaccccctaagtttgcaaaagt 156  Q
    |||||||||| ||||||||||||| |||||||||||||||    
T  31183934 tggcttaaactcactttttaccccttaagtttgcaaaagt 31183895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 165
Target Start/End: Original strand, 49700415 - 49700462
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaatttt 165  Q
    |||||||||  |||||||||||| ||||||| ||||||||||||||||    
T  49700415 ggcttaaacgtactttttaccccttaagtttacaaaagttgcaatttt 49700462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 97
Target Start/End: Original strand, 1866236 - 1866282
Alignment:
Q  51 aattcaaccctctcatctctcattataaaaactcctctcacttgata 97  Q
    |||||||  |||||||||||||||||||||  |||||||||||||||    
T  1866236 aattcaatgctctcatctctcattataaaatgtcctctcacttgata 1866282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 97
Target Start/End: Original strand, 11380997 - 11381035
Alignment:
Q  59 cctctcatctctcattataaaaactcctctcacttgata 97  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  11380997 cctctcatctctcattataactactcctctcacttgata 11381035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 18667375 - 18667321
Alignment:
Q  117 tggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    ||||||||||  |||||||||||  || |||||||||||||||||||||| ||||    
T  18667375 tggcttaaacatactttttaccctttatgtttgcaaaagttgcaattttggcccc 18667321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 34370823 - 34370769
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccct 172  Q
    |||| |||| ||| |||| |||||||||||| ||||||||||||||||| |||||    
T  34370823 ggctaaaacgcaccttttgccccctaagtttacaaaagttgcaattttggcccct 34370769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 6049899 - 6049830
Alignment:
Q  28 gtaaagattgatccaagggttacaattcaaccctctcatctctcattataaaaactcctctcacttgata 97  Q
    ||||||||| |||||| ||| | ||||||||||||||||||||||  |||   | |||||||||||||||    
T  6049899 gtaaagattaatccaaaggtcagaattcaaccctctcatctctcacaatagttagtcctctcacttgata 6049830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 166
Target Start/End: Original strand, 31182620 - 31182665
Alignment:
Q  121 ttaaacccactttttaccccctaagtttgcaaaagttgcaattttg 166  Q
    |||||| ||||||||| |||||||||||| |||||||| |||||||    
T  31182620 ttaaacacactttttaacccctaagtttgtaaaagttgtaattttg 31182665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 56295280 - 56295240
Alignment:
Q  57 accctctcatctctcattataaaaactcctctcacttgata 97  Q
    |||||||||||||||||| |||||  |||||||||||||||    
T  56295280 accctctcatctctcattttaaaaggtcctctcacttgata 56295240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 118 - 274
Target Start/End: Original strand, 268411 - 268568
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc-tattnnnnnnntggcaaaagtggccctccatctctaccccctttt 216  Q
    |||| |||| ||||||||||| | ||||||||||||||||||||||||| |||| ||||       |||||||||||  || | || |||||||||||||    
T  268411 ggctaaaacgcactttttacctcttaagtttgcaaaagttgcaattttggccccctattaaaaaaatggcaaaagtgatcccctatgtctaccccctttt 268510  T
Q  217 gtaaaatgtcaattttgactcgatcaaccatacgtggcatgccacctgtgtatttatt 274  Q
    | |||| ||||||||||||||  |||||| || |||||| ||||||||||||||||||    
T  268511 gcaaaacgtcaattttgactcagtcaaccctatgtggcacgccacctgtgtatttatt 268568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 8e-25; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 123 - 276
Target Start/End: Complemental strand, 17341550 - 17341395
Alignment:
Q  123 aaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc-tattnnnnnnn-tggcaaaagtggccctccatctctacccccttttgtaa 220  Q
    |||| |||||||| ||||||||||||||| ||||||||||||||||||| ||||        ||  ||||||| ||| |||| |||||||||||||| ||    
T  17341550 aaacgcactttttgccccctaagtttgcagaagttgcaattttgaccccctattaaaaaaaatgataaaagtgaccccccatgtctacccccttttgcaa 17341451  T
Q  221 aatgtcaattttgactcgatcaaccatacgtggcatgccacctgtgtatttatttt 276  Q
    || ||||||||||||||  ||||||||| |||||| | ||||||||||||||||||    
T  17341450 aacgtcaattttgactcagtcaaccatatgtggcacgtcacctgtgtatttatttt 17341395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 128 - 276
Target Start/End: Complemental strand, 40630673 - 40630523
Alignment:
Q  128 cactttttaccccctaagtttgcaaaagttgcaattttgacccc-tattnnnnnnn-tggcaaaagtggccctccatctctacccccttttgtaaaatgt 225  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||        | |||||||||  || | || |||||||||||||| |||| ||    
T  40630673 cactttttaccccctaagtttgcaaaagttgcaattttggccccctattaaaaaaaatagcaaaagtgatcccctatgtctacccccttttgcaaaacgt 40630574  T
Q  226 caattttgactcgatcaaccatacgtggcatgccacctgtgtatttatttt 276  Q
    ||||||||||||  |||||| || |||||| ||||||||||||||||||||    
T  40630573 caattttgactcagtcaaccctatgtggcacgccacctgtgtatttatttt 40630523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 118 - 276
Target Start/End: Original strand, 40630018 - 40630178
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccct-attnnnnnnn-tggcaaaagtggccctccatctctacccccttt 215  Q
    |||| |||| ||||||||||||  ||||||||||||||||||||||||| | ||| |||        |||||||||||  || | || ||||||||||||    
T  40630018 ggctaaaacgcactttttacccattaagtttgcaaaagttgcaattttggcaccttattaaaaaaaatggcaaaagtgatcccctatgtctacccccttt 40630117  T
Q  216 tgtaaaatgtcaattttgactcgatcaaccatacgtggcatgccacctgtgtatttatttt 276  Q
    || |||||||||||||||||||  |||||| || |||||| ||||||||||||||||||||    
T  40630118 tgcaaaatgtcaattttgactcagtcaaccctatgtggcacgccacctgtgtatttatttt 40630178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 118 - 279
Target Start/End: Original strand, 38261305 - 38261468
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacc-cctattnnnnnnn-tggcaaaagtggccctccatctctacccccttt 215  Q
    |||| |||| ||||||||  |||||||||||||| |||||||||||||| || ||||||        ||||||||||| ||| |||| ||||||||||||    
T  38261305 ggctaaaacgcactttttgtcccctaagtttgcagaagttgcaattttggccacctattaaaaaaaatggcaaaagtgaccccccatgtctacccccttt 38261404  T
Q  216 tgtaaaatgtcaattttgactcgatcaaccatacgtggcatgccacctgtgtatttattttatt 279  Q
    || |||| ||||||||||||||  ||||||||| |||||| ||||||||   ||||||||||||    
T  38261405 tgcaaaacgtcaattttgactcagtcaaccatatgtggcacgccacctggcaatttattttatt 38261468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 117 - 171
Target Start/End: Original strand, 2213921 - 2213975
Alignment:
Q  117 tggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  2213921 tggcttaaacccacttttgaccccctaagttttcaaaagttgcaattttgacccc 2213975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 37087113 - 37087161
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttg 166  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  37087113 ggcttaaactcactttttaccccctaagtttgcaaaagttgcaattttg 37087161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 118 - 264
Target Start/End: Complemental strand, 37088216 - 37088070
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgc-aattttgacccctattnnnnnnntggcaaaagtggccctccatctctaccccctttt 216  Q
    ||||||||  |||||||||||||||||||||||||||||||| ||||||  ||||||||       ||||||||||  ||| |||| | | |||||||||    
T  37088216 ggcttaaattcactttttaccccctaagtttgcaaaagttgcaaattttaccccctattaaaaaaatggcaaaagttaccc-ccatgttttccccctttt 37088118  T
Q  217 gtaaaatgtcaattttgactcga-tcaaccatacgtggcatgccacctg 264  Q
    | |||| ||| |||||||| ||| ||||||||| |||||||||||||||    
T  37088117 gcaaaacgtcgattttgac-cgagtcaaccatatgtggcatgccacctg 37088070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 131 - 276
Target Start/End: Complemental strand, 38262385 - 38262240
Alignment:
Q  131 tttttaccccctaagtttgcaaaagttgcaattttgacccc-tattnnnnnnnt-ggcaaaagtggccctccatctctacccccttttgtaaaatgtcaa 228  Q
    ||||| ||||||||||||||| |||||||||||||| |||| ||||         |||||||||| |||  ||| | |||||||||||| |||| |||||    
T  38262385 tttttgccccctaagtttgcagaagttgcaattttggccccctattaaaaaaaaaggcaaaagtgaccc--catgtttacccccttttgcaaaacgtcaa 38262288  T
Q  229 ttttgactcgatcaaccatacgtggcatgccacctgtgtatttatttt 276  Q
    |||| ||||  ||||||||| |||||||||||||||||||||| ||||    
T  38262287 ttttaactcagtcaaccatatgtggcatgccacctgtgtatttttttt 38262240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 37023866 - 37023812
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccct 172  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||    
T  37023866 ggcttaaacacactttttacctcctaagtttgcaaaagttgcaattttggcccct 37023812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 6247384 - 6247437
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    |||| |||| |||||||| |||||||||||||||||||||||||||||||||||    
T  6247384 ggctaaaacgcactttttgccccctaagtttgcaaaagttgcaattttgacccc 6247437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 8652012 - 8652064
Alignment:
Q  58 ccctctcatctctcattataaaaactcctctcacttgatacatcttatatata 110  Q
    ||||||||||||||||| ||||||||||||||| |||||||||| ||||||||    
T  8652012 ccctctcatctctcattttaaaaactcctctcatttgatacatcctatatata 8652064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 45580108 - 45580156
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttg 166  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  45580108 ggcttaaacacactttttactccctaagtttgcaaaagttgcaattttg 45580156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 172
Target Start/End: Complemental strand, 50297370 - 50297315
Alignment:
Q  117 tggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccct 172  Q
    ||||| |||| |||||||| |||||||||||||||||||||||||||||| |||||    
T  50297370 tggctaaaacgcactttttgccccctaagtttgcaaaagttgcaattttggcccct 50297315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 113 - 171
Target Start/End: Complemental strand, 6248516 - 6248458
Alignment:
Q  113 aaaatggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    |||| |||| |||| |||||||| |||||||||||||||||||||||||||||| ||||    
T  6248516 aaaaaggctaaaacgcactttttgccccctaagtttgcaaaagttgcaattttggcccc 6248458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 45583314 - 45583261
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    ||||||||| |||||| || ||||||||||||||||||||||||||||| ||||    
T  45583314 ggcttaaacacactttctaacccctaagtttgcaaaagttgcaattttggcccc 45583261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 52986307 - 52986254
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    ||||||||| |||||||||| ||||||||||| ||||||| |||||||||||||    
T  52986307 ggcttaaacacactttttactccctaagtttgtaaaagttacaattttgacccc 52986254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 120 - 171
Target Start/End: Original strand, 9434447 - 9434498
Alignment:
Q  120 cttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    ||||||||||||||| |||| |||||||||||||||| ||||||||| ||||    
T  9434447 cttaaacccacttttcaccctctaagtttgcaaaagtagcaattttggcccc 9434498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 25080878 - 25080820
Alignment:
Q  39 tccaagggttacaattcaaccctctcatctctcattataaaaactcctctcacttgata 97  Q
    ||||| ||||| || |||| |||||||||||||| ||||| ||||||||||||||||||    
T  25080878 tccaatggttataaatcaatcctctcatctctcactataacaactcctctcacttgata 25080820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 206 - 271
Target Start/End: Complemental strand, 9435530 - 9435465
Alignment:
Q  206 tacccccttttgtaaaatgtcaattttgactcgatcaaccatacgtggcatgccacctgtgtattt 271  Q
    |||||||||||| ||||  ||||||||||| |  ||||||||| |||||||||||||| |||||||    
T  9435530 tacccccttttgcaaaagctcaattttgacccagtcaaccatatgtggcatgccacctatgtattt 9435465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 17340467 - 17340516
Alignment:
Q  117 tggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttg 166  Q
    ||||| |||| |||||||| ||||||||||||||| ||||||||||||||    
T  17340467 tggctaaaacgcactttttgccccctaagtttgcagaagttgcaattttg 17340516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 36502359 - 36502427
Alignment:
Q  28 gtaaagattgatccaagggttacaattcaaccctctcatctctcattataaaaactcctctcacttgata 97  Q
    ||||||||| |||||| |||||  ||| |||||||||||||||||  || ||||||||||||||||||||    
T  36502359 gtaaagattaatccaatggttaggattaaaccctctcatctctcacaat-aaaactcctctcacttgata 36502427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 184 - 279
Target Start/End: Original strand, 17340539 - 17340635
Alignment:
Q  184 ggcaaaagtggccctccatctctac-ccccttttgtaaaatgtcaattttgactcgatcaaccatacgtggcatgccacctgtgtatttattttatt 279  Q
    |||||||||| ||| |||| ||||  ||||||||| |||| ||||||||||||||  ||||||||| ||||||| || ||||   ||||||||||||    
T  17340539 ggcaaaagtgaccccccatgtctattccccttttgcaaaacgtcaattttgactcagtcaaccatatgtggcataccgcctggcaatttattttatt 17340635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 25081537 - 25081589
Alignment:
Q  45 ggttacaattcaaccctctcatctctcattataaaaactcctctcacttgata 97  Q
    ||||| || |||| |||||||||||||| ||||| ||||||||||||||||||    
T  25081537 ggttataaatcaatcctctcatctctcactataacaactcctctcacttgata 25081589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 35653810 - 35653877
Alignment:
Q  31 aagattgatccaagggttacaattcaaccctctcatctctcattataaaaactcctctcacttgataca 99  Q
    |||||| ||| || |||||  |||||||||||||||||||||  || ||||||||||||||||||||||    
T  35653810 aagattaatcaaatggttaggattcaaccctctcatctctcacaat-aaaactcctctcacttgataca 35653877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 52985130 - 52985178
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttg 166  Q
    ||||||||| |||||||||||| ||||||||| ||||||| ||||||||    
T  52985130 ggcttaaacacactttttaccctctaagtttgtaaaagttacaattttg 52985178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 171
Target Start/End: Original strand, 50296216 - 50296259
Alignment:
Q  128 cactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    |||||||| |||| ||||||||||||||||||||||||| ||||    
T  50296216 cactttttgccccttaagtttgcaaaagttgcaattttggcccc 50296259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 100
Target Start/End: Complemental strand, 8651331 - 8651289
Alignment:
Q  58 ccctctcatctctcattataaaaactcctctcacttgatacat 100  Q
    ||||||||||||||||| ||||||||||||||| |||| ||||    
T  8651331 ccctctcatctctcattttaaaaactcctctcatttgaaacat 8651289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 99
Target Start/End: Complemental strand, 35653189 - 35653120
Alignment:
Q  29 taaagattgatccaagggttacaattcaaccctctcatctctcattataaaaactcctctcacttgataca 99  Q
    |||||||| || ||| |||||  ||| |||||||||||||||||  |||||| ||||||||||||||||||    
T  35653189 taaagattaattcaatggttaggatttaaccctctcatctctcacaataaaa-ctcctctcacttgataca 35653120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 97
Target Start/End: Complemental strand, 46915838 - 46915800
Alignment:
Q  59 cctctcatctctcattataaaaactcctctcacttgata 97  Q
    |||||||||||||||| ||| ||||||||||||||||||    
T  46915838 cctctcatctctcattttaacaactcctctcacttgata 46915800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 97
Target Start/End: Original strand, 55337592 - 55337630
Alignment:
Q  59 cctctcatctctcattataaaaactcctctcacttgata 97  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  55337592 cctctcatctctcattataattactcctctcacttgata 55337630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 436
Target Start/End: Original strand, 38261607 - 38261644
Alignment:
Q  399 tttttcccccaattcctttcatctccccttatctttcc 436  Q
    ||||||||||||||| |||||||| |||||||||||||    
T  38261607 tttttcccccaattcttttcatctacccttatctttcc 38261644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 97
Target Start/End: Complemental strand, 45059831 - 45059790
Alignment:
Q  56 aaccctctcatctctcattataaaaactcctctcacttgata 97  Q
    ||||||||||||||||||| |||||  |||||||||||||||    
T  45059831 aaccctctcatctctcattttaaaaggtcctctcacttgata 45059790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 45082203 - 45082244
Alignment:
Q  56 aaccctctcatctctcattataaaaactcctctcacttgata 97  Q
    ||||||||||||||||||| |||||  |||||||||||||||    
T  45082203 aaccctctcatctctcattttaaaagatcctctcacttgata 45082244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 110
Target Start/End: Original strand, 17604802 - 17604874
Alignment:
Q  38 atccaagggttacaattcaaccctctcatctctcattataaaaactcctctcacttgatacatcttatatata 110  Q
    |||||||||| |  ||| || ||||||||||||||  |||| || ||||||||||||||||| | ||||||||    
T  17604802 atccaagggtcatgattgaagcctctcatctctcacaataagaaatcctctcacttgatacaccctatatata 17604874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 129 - 276
Target Start/End: Original strand, 24817 - 24965
Alignment:
Q  129 actttttaccccctaagtttgcaaaagttgcaattttgacccc-tattnnnnnnn-tggcaaaagtggccctccatctctacccccttttgtaaaatgtc 226  Q
    ||||||| ||||||||||||||| |||||||||||||| |||| ||||        ||||||||||| ||| |||| |||||||||||||| |||| |||    
T  24817 actttttgccccctaagtttgcagaagttgcaattttggccccctattaaaaaaaatggcaaaagtgaccc-ccatgtctacccccttttgcaaaacgtc 24915  T
Q  227 aattttgactcgatcaaccatacgtggcatgccacctgtgtatttatttt 276  Q
    |||||||||||   |||||||| |||||| ||||| ||||||||||||||    
T  24916 aattttgactcagccaaccatatgtggcacgccacttgtgtatttatttt 24965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 129 - 276
Target Start/End: Original strand, 37334 - 37482
Alignment:
Q  129 actttttaccccctaagtttgcaaaagttgcaattttgacccc-tattnnnnnnn-tggcaaaagtggccctccatctctacccccttttgtaaaatgtc 226  Q
    ||||||| ||||||||||||||| |||||||||||||| |||| ||||        ||||||||||| ||| |||| |||||||||||||| |||| |||    
T  37334 actttttgccccctaagtttgcagaagttgcaattttggccccctattaaaaaaaatggcaaaagtgaccc-ccatgtctacccccttttgcaaaacgtc 37432  T
Q  227 aattttgactcgatcaaccatacgtggcatgccacctgtgtatttatttt 276  Q
    |||||||||||   |||||||| |||||| ||||| ||||||||||||||    
T  37433 aattttgactcagccaaccatatgtggcacgccacttgtgtatttatttt 37482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 118 - 279
Target Start/End: Complemental strand, 38421 - 38257
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc-tattnnnnnnn--tggcaaaagtggccctccatctctaccccctt 214  Q
    |||| |||| |||||||| |||| |||||||||| |||||||||||||| |||| ||||         ||||||||||| |||||||| |||||||||||    
T  38421 ggctaaaacgcactttttgccccttaagtttgcagaagttgcaattttggccccctattaaaaaaaaatggcaaaagtgaccctccatgtctaccccctt 38322  T
Q  215 ttgtaaaatgtcaattttgactcgatcaaccatacgtggcatgccacctgtgtatttattttatt 279  Q
    ||| |||| |||||||||||||   |||| |||| |||||| || |||||   ||||||||||||    
T  38321 ttgcaaaacgtcaattttgacttagtcaaacatatgtggcacgcaacctggccatttattttatt 38257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 436
Target Start/End: Complemental strand, 38131 - 38095
Alignment:
Q  400 ttttcccccaattcctttcatctccccttatctttcc 436  Q
    |||||||||||||| |||||||| |||||||||||||    
T  38131 ttttcccccaattcttttcatctacccttatctttcc 38095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 118 - 279
Target Start/End: Complemental strand, 27849441 - 27849279
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaatttt-gacccctattnnnnnnntggcaaaagtggccctccatctctaccccctttt 216  Q
    ||||||||| ||||||||||| |||||||||| ||||||||||||||| | ||||||||       |||||||||   ||| |||| | | |||||||||    
T  27849441 ggcttaaactcactttttacctcctaagtttgtaaaagttgcaattttagccccctattaaaaaaatggcaaaagctaccccccatgttttccccctttt 27849342  T
Q  217 gtaaaatgtcaattttgactcga-tcaaccatacgtggcatgccacctgtgtatttattttatt 279  Q
    | |||| ||| |||||||| ||| ||||| ||| ||||||||||||||| |||||| |||||||    
T  27849341 gcaaaacgtcgattttgac-cgagtcaactatatgtggcatgccacctgggtattttttttatt 27849279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 27848336 - 27848389
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  27848336 ggcttaaactcactttttaccccctaagtttgcaaaagttgcaattttggcccc 27848389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 118 - 169
Target Start/End: Original strand, 3627615 - 3627666
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacc 169  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  3627615 ggcttaaacacactttttaccccttaagtttgcaaaagttgcaattttgacc 3627666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 128 - 274
Target Start/End: Original strand, 26068901 - 26069049
Alignment:
Q  128 cactttttaccccctaagtttgcaaaagttgcaatttt-gacccctatt-nnnnnnntggcaaaagtggccctccatctctacccccttttgtaaaatgt 225  Q
    ||||||||||||| |||||||||||||||||||||||| | ||||||||        |||||||||||  || | || | |||||||||||| |||| ||    
T  26068901 cactttttaccccttaagtttgcaaaagttgcaattttggccccctattaaaaaaaatggcaaaagtgatcccctatgtttacccccttttgcaaaacgt 26069000  T
Q  226 caattttgactcgatcaaccatacgtggcatgccacctgtgtatttatt 274  Q
    |||||||||| |  ||||||  | |||||| ||||||||||||||||||    
T  26069001 caattttgacccagtcaaccccatgtggcacgccacctgtgtatttatt 26069049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 128 - 276
Target Start/End: Complemental strand, 33076302 - 33076153
Alignment:
Q  128 cactttttaccccctaagtttgcaaaagttgcaatttt-gacccctatt-nnnnnnntggcaaaagtggccctccatctctacccccttttgtaaaatgt 225  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||        |||||||||   ||| |||| | | |||||||||| |||| ||    
T  33076302 cactttttaccccctaagtttgcaaaagttgcaattttggccccctattaaaaaaaatggcaaaagctaccc-ccatgttttcccccttttgcaaaacgt 33076204  T
Q  226 caattttgactcgatcaaccatacgtggcatgccacctgtgtatttatttt 276  Q
    | ||||||||   |||||||||| |||||||||||| || |||||||||||    
T  33076203 cgattttgaccgaatcaaccatatgtggcatgccacttgggtatttatttt 33076153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 42700950 - 42701003
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    |||||||||  ||||||||||||||||||||||||| |||||||||||||||||    
T  42700950 ggcttaaacaaactttttaccccctaagtttgcaaaggttgcaattttgacccc 42701003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 44702364 - 44702435
Alignment:
Q  208 cccccttttgtaaaatgtcaattttgactcga-tcaaccatacgtggcatgccacctgtgtatttattttatt 279  Q
    |||||||||| |||||||| |||||||| ||| ||||||||||||||||||||||||| |||||| |||||||    
T  44702364 cccccttttgcaaaatgtcgattttgac-cgagtcaaccatacgtggcatgccacctgggtattttttttatt 44702435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 20126185 - 20126238
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    |||| |||| |||||||| |||||||||||||||||||||||||||||| ||||    
T  20126185 ggctaaaacgcactttttgccccctaagtttgcaaaagttgcaattttggcccc 20126238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 117 - 268
Target Start/End: Original strand, 33075185 - 33075336
Alignment:
Q  117 tggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgaccc-ctattnnnnnnntggcaaaagtggccctccatctctacccccttt 215  Q
    ||||||||||  |||||||||| |||||||||| |||||||| ||||||||||| |||||       |||||||||   ||| |||| | | ||||||||    
T  33075185 tggcttaaacttactttttacctcctaagtttgtaaaagttgtaattttgaccctctattaaaaaaatggcaaaagctaccc-ccatgttttcccccttt 33075283  T
Q  216 tgtaaaatgtcaattttgactcga-tcaaccatacgtggcatgccacctgtgta 268  Q
    || |||| ||| |||||||| ||| ||||||||| |||||||||||| ||||||    
T  33075284 tgcaaaacgtcgattttgac-cgagtcaaccatatgtggcatgccacatgtgta 33075336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 24607837 - 24607784
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    |||| |||| |||||||| ||||||||||||||||| |||||||||||| ||||    
T  24607837 ggctaaaacacactttttgccccctaagtttgcaaaggttgcaattttggcccc 24607784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 3453348 - 3453388
Alignment:
Q  131 tttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    ||||| |||||||||||||||||||||| ||||||||||||    
T  3453348 tttttgccccctaagtttgcaaaagttgaaattttgacccc 3453388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 42702174 - 42702126
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttg 166  Q
    ||||||||| ||||||||||||| ||||||| |||| ||||||||||||    
T  42702174 ggcttaaacgcactttttaccccttaagtttacaaaggttgcaattttg 42702126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 97
Target Start/End: Original strand, 13913460 - 13913503
Alignment:
Q  54 tcaaccctctcatctctcattataaaaactcctctcacttgata 97  Q
    ||||||||||||||||||||||||| |  |||||||||||||||    
T  13913460 tcaaccctctcatctctcattataagatgtcctctcacttgata 13913503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 171
Target Start/End: Complemental strand, 3454508 - 3454450
Alignment:
Q  113 aaaatggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    |||| |||| |||| ||| |||| |||||||||||||||||||||| ||||||| ||||    
T  3454508 aaaaaggctaaaacgcaccttttgccccctaagtttgcaaaagttgtaattttggcccc 3454450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 97
Target Start/End: Complemental strand, 44356857 - 44356819
Alignment:
Q  59 cctctcatctctcattataaaaactcctctcacttgata 97  Q
    |||||||||||||||| ||| ||||||||||||||||||    
T  44356857 cctctcatctctcattttaacaactcctctcacttgata 44356819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 20127409 - 20127356
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    ||||||||  ||||||||||||| ||||||| |||| |||||||||||| ||||    
T  20127409 ggcttaaatgcactttttaccccttaagtttacaaaggttgcaattttggcccc 20127356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 30796300 - 30796247
Alignment:
Q  117 tggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgaccc 170  Q
    ||||||||| |||||||| |||||||||||||  |||||| || ||||||||||    
T  30796300 tggcttaaatccacttttgaccccctaagttttaaaaagtagcgattttgaccc 30796247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 109
Target Start/End: Original strand, 44536580 - 44536628
Alignment:
Q  60 ctctcatctctcattataaaaactcctctcacttgatacatcttatatat 109  Q
    |||||||||||||  || ||||||||| ||||||||||||||||||||||    
T  44536580 ctctcatctctcac-attaaaactcctgtcacttgatacatcttatatat 44536628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 3769327 - 3769390
Alignment:
Q  31 aagattgatccaagggttacaattcaaccctctcatctctcattataaaaactcctctcacttga 95  Q
    ||||||||||||||||||  || | ||| |||||||||||||  |||||||| ||||||||||||    
T  3769327 aagattgatccaagggttgtaacttaacactctcatctctcacaataaaaac-cctctcacttga 3769390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0827 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0827
Description:

Target: scaffold0827; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 116 - 243
Target Start/End: Complemental strand, 3347 - 3218
Alignment:
Q  116 atggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttga-cccctatt-nnnnnnntggcaaaagtggccctccatctctaccccct 213  Q
    |||||| |||| |||||||||| | ||||||||||||||||||||||||||| ||||||||        ||||||||||| | | |||| | || |||||    
T  3347 atggctaaaacgcactttttacacgctaagtttgcaaaagttgcaattttgaccccctattaaagaaaatggcaaaagtgacaccccatgtttatcccct 3248  T
Q  214 tttgtaaaatgtcaattttgactcgatcaa 243  Q
    |||| |||||||||||||||||| ||||||    
T  3247 tttgcaaaatgtcaattttgacttgatcaa 3218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0446 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 118 - 165
Target Start/End: Original strand, 11561 - 11608
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaatttt 165  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  11561 ggcttaaactcactttttaccccctaagtttgcaaaagttgcaatttt 11608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1212 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: scaffold1212
Description:

Target: scaffold1212; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 2135 - 2183
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttg 166  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||    
T  2135 ggctaaaacgcactttttaccccctaagtttgcaaaagttgcaattttg 2183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1212; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 204 - 276
Target Start/End: Original strand, 2196 - 2268
Alignment:
Q  204 tctacccccttttgtaaaatgtcaattttgactcgatcaaccatacgtggcatgccacctgtgtatttatttt 276  Q
    |||||||||||||| |||| ||||||||||||||  | |||| || |||||| ||||||||||||||||||||    
T  2196 tctacccccttttgcaaaacgtcaattttgactcagtgaaccctatgtggcacgccacctgtgtatttatttt 2268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0203 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 9562 - 9615
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    |||| |||| |||||||| |||||||||||||||||||||||||||||| ||||    
T  9562 ggctaaaacgcactttttgccccctaagtttgcaaaagttgcaattttggcccc 9615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0203; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 14936 - 14989
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    |||| |||| |||||||| |||||||||||||||||||||||||||||| ||||    
T  14936 ggctaaaacgcactttttgccccctaagtttgcaaaagttgcaattttggcccc 14989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0203; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 16163 - 16110
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    ||||||||| ||||||||||||| ||||||| |||| |||||||||||| ||||    
T  16163 ggcttaaacgcactttttaccccttaagtttacaaaggttgcaattttggcccc 16110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 81065 - 81012
Alignment:
Q  118 ggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    ||||||||| |||| || ||||||||||||||||||||| || |||||||||||    
T  81065 ggcttaaacgcactattcaccccctaagtttgcaaaagtagcgattttgacccc 81012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 79834 - 79886
Alignment:
Q  119 gcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgacccc 171  Q
    |||||||| |||| |||||||| ||||||||||||||| || |||||| ||||    
T  79834 gcttaaacgcactatttaccccttaagtttgcaaaagtagcgattttggcccc 79886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0285 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 16901 - 16830
Alignment:
Q  25 atggtaaagattgatccaagggttacaattcaaccctctcatctctcattataaaaactcctctcacttgata 97  Q
    ||||||| ||||||||||| || ||  ||| ||||||||||||||||||| |  |||||||||||||||||||    
T  16901 atggtaaggattgatccaaaggctatgatttaaccctctcatctctcatt-ttgaaactcctctcacttgata 16830  T

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Target: scaffold0006 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 139302 - 139382
Alignment:
Q  31 aagattgatccaagggttacaattcaaccctctcatctctcattataaaaactcctctcacttgatacatcttatatataa 111  Q
    ||||| ||||||||||||   ||| ||||||||||||||||| | |||| | | |||||| ||||||||||  ||||||||    
T  139302 aagatggatccaagggttgtgatttaaccctctcatctctcaatgtaaatattgctctcatttgatacatcccatatataa 139382  T

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