View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6537_low_7 (Length: 419)
Name: NF6537_low_7
Description: NF6537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6537_low_7 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 16 - 419
Target Start/End: Original strand, 16352941 - 16353344
Alignment:
| Q |
16 |
atccgtttggttcatctaagtggctatgtagaggattttgagcaaccaatttcagttaaccaagtgatcaatagtagaaatccaccaactcactttgttt |
115 |
Q |
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| T |
16352941 |
atccgtttggttcatctaagtggctatgtagaggattttgagcaaccaatttcagttaaccaagtgatcaatagtagaaatccaccaactcactttgttt |
16353040 |
T |
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| Q |
116 |
gtacctcccttcaacttctttcatcttcttcaaaaccattgaaaggagatacacaacttcaaccaggaaatgtttacttcatgctaccttattcaattct |
215 |
Q |
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| T |
16353041 |
gtacctcccttcaacttctttcatcttcttcaaaaccattgaaaggagatacacaacttcaaccaggaaatgtttacttcatgctaccttattcaattct |
16353140 |
T |
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| Q |
216 |
acaagccgatgtttcgcctgtggatttggcttcgcttgcgaaaaggctcactgcaaaggcgaaacctagtagatttgatgagaaaaagtcattgaaaggt |
315 |
Q |
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| T |
16353141 |
acaagccgatgtttcgcctgtggatttggcttcgcttgcgaaaaggctcactgcaaaggcgaaaactagtagatttgatgagaaaaagtcattgaaaggt |
16353240 |
T |
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| Q |
316 |
agtagtcctttgtcagaccaagatgctttgagcagtatttggagttccccttcgatgagtcctggaagagttgcggtggctgaataatatggtatgacgt |
415 |
Q |
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| T |
16353241 |
agtagtcctttgtcaaaccaagatgctttgagcagtatttggagttccccttcgatgagtcctggaagagttgcggtggctgaacaatatggtatgacgt |
16353340 |
T |
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| Q |
416 |
atgg |
419 |
Q |
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| T |
16353341 |
atgg |
16353344 |
T |
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