View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6537_low_8 (Length: 369)
Name: NF6537_low_8
Description: NF6537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6537_low_8 |
 | |
|
| [»] scaffold0189 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0189 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 25543 - 25896
Alignment:
| Q |
1 |
aaagaattaatttaaaattcattaggtatttgtttttcgctatcaagatctttatttttagccaaaacttgacaaaatattcattttattctcagcctct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25543 |
aaagaattaatttaaaattcattaggtatttgtttttcgctatcaagatctttatttttagccaaaacttgacaaaatattcattttattctcagcctct |
25642 |
T |
|
| Q |
101 |
tctccattgatacggtgacagagaagtgcactacaagtgaactctcaaacaaaatttcttcaatgccatcaaaagtagcacacatcttgaatcagctgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25643 |
tctccattgatacggtgacagagaagtgcactacaagtgaactctcaaacaaaatttcttcaatgccatcaaaagtagcacacatcttgaatcagctgaa |
25742 |
T |
|
| Q |
201 |
tttgtcttgcaagaggaataccaatgttcagtctgatccatcacaagccaacactgcagtaggcaatgatgaccacggacaagccgttttgaaggaatca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25743 |
tttgtcttgcaagaggaataccaatgttcagtctgatccatcacaagccaacactgcagtaggcaatgatgaccacggacaagccgttttgaaggaatca |
25842 |
T |
|
| Q |
301 |
aaagaaaacatgtccaacaattctcaagctgcagttatttcaggacaaggaaag |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25843 |
aaagaaaacatgtccaacaattctcaagctgcagttatttcaggacaaggaaag |
25896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 42168649 - 42168579
Alignment:
| Q |
1 |
aaagaattaatttaaaattcattaggtatttgtttttcgctatcaagatctttatttttagccaaaacttga |
72 |
Q |
| |
|
|||||| |||||||||||||||||| | ||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42168649 |
aaagaaataatttaaaattcattagtttttt-tgtttcgctatcaagatctttatttttagccaaaacttga |
42168579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 6927460 - 6927390
Alignment:
| Q |
1 |
aaagaattaatttaaaattcattaggtatttgtttttcgctatcaagatctttatttttagccaaaacttga |
72 |
Q |
| |
|
|||||| |||||||||||||||||| | ||| | ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
6927460 |
aaagaaataatttaaaattcattagtttttt-tgtttcgctatcaagatctttatttttagtcaaaacttga |
6927390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 17254425 - 17254355
Alignment:
| Q |
1 |
aaagaattaatttaaaattcattaggtatttgtttttcgctatcaagatctttatttttagccaaaacttga |
72 |
Q |
| |
|
|||||| |||||||||||||||||| | ||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17254425 |
aaagaaataatttaaaattcattagtttttt-tgtttcgctatcaagatctttatttttagccaaaacttga |
17254355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 20374714 - 20374784
Alignment:
| Q |
1 |
aaagaattaatttaaaattcattaggtatttgtttttcgctatcaagatctttatttttagccaaaacttga |
72 |
Q |
| |
|
|||||| |||||||||||||||||| | ||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20374714 |
aaagaaataatttaaaattcattagtttttt-tgtttcgctatcaagatctttatttttagccaaaacttga |
20374784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 20482133 - 20482201
Alignment:
| Q |
3 |
agaattaatttaaaattcattaggtatttgtttttcgctatcaagatctttatttttagccaaaacttga |
72 |
Q |
| |
|
|||| |||||||||||||||||| | ||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20482133 |
agaaataatttaaaattcattagtttttt-tgtttcgctatcaagatctttatttttagccaaaacttga |
20482201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 252 - 354
Target Start/End: Original strand, 28404648 - 28404750
Alignment:
| Q |
252 |
cactgcagtaggcaatgatgaccacggacaagccgttttgaaggaatcaaaagaaaacatgtccaacaattctcaagctgcagttatttcaggacaagga |
351 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||| |||||||||| ||||||||||| |||||||||| ||||||| |||||| || ||| |
|
|
| T |
28404648 |
cactgcagtaggcaatgatgaccacaagcaaaatgttttgaagaaatcaaaagataacatgtccaataattctcaaggagcagttaattcagggcatgga |
28404747 |
T |
|
| Q |
352 |
aag |
354 |
Q |
| |
|
||| |
|
|
| T |
28404748 |
aag |
28404750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 502717 - 502647
Alignment:
| Q |
1 |
aaagaattaatttaaaattcattaggtatttgtttttcgctatcaagatctttatttttagccaaaacttga |
72 |
Q |
| |
|
|||||| |||||||||||||||||| | ||| | ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
502717 |
aaagaaataatttaaaattcattagtttttt-tgtttcgctatcaagatctttatttttagtcaaaacttga |
502647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 1031657 - 1031720
Alignment:
| Q |
8 |
taatttaaaattcattaggtatttgtttttcgctatcaagatctttatttttagccaaaacttga |
72 |
Q |
| |
|
|||||||||||||||||| | ||| | |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1031657 |
taatttaaaattcattagtttttt-tgtttcgccatcaagatctttatttttagccaaaacttga |
1031720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 14539226 - 14539156
Alignment:
| Q |
1 |
aaagaattaatttaaaattcattaggtatttgtttttcgctatcaagatctttatttttagccaaaacttga |
72 |
Q |
| |
|
|||||| |||||||||||||||||| | ||| | ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
14539226 |
aaagaaataatttaaaattcattagtttttt-tgtttcgctatcaagatctttatttttagtcaaaacttga |
14539156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 39231046 - 39231109
Alignment:
| Q |
8 |
taatttaaaattcattaggtatttgtttttcgctatcaagatctttatttttagccaaaacttga |
72 |
Q |
| |
|
|||||||||||||||||| | ||| | ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
39231046 |
taatttaaaattcattagtttttt-tgtttcgctatcaagatctttgtttttagccaaaacttga |
39231109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University