View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6537_low_9 (Length: 363)
Name: NF6537_low_9
Description: NF6537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6537_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 20 - 351
Target Start/End: Original strand, 36562448 - 36562779
Alignment:
| Q |
20 |
catatccagggtcctataagcagtatccctcccctcagtcaaattctcaatactcttctccatctccttcttctctccaaccaatttactattttccacc |
119 |
Q |
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| T |
36562448 |
catatccagggtcctataaacagtatccctcccctcagtcaaattctcaatactcttctccatctccttcttctctccaaccaatttactattttccacc |
36562547 |
T |
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| Q |
120 |
atcatttccctttccttctccagagcaacctcaatggtttcctccatttcacgaatcttcccacgcatcacagcctcttcattccgcgagctcttcaaaa |
219 |
Q |
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| T |
36562548 |
atcatttccctttccttctccagagcaacctcaatagtttcctccatttcacgaatcttcccacgcatcacagcctcttcattccgcgagctcttcaaaa |
36562647 |
T |
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| Q |
220 |
cctcattaagctgttgcaactcaagtccaagattggaaatcttgacgtcctgagtactattcacaccctcagcatcattcttctccttcaccaccaaatc |
319 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36562648 |
cctcattaagctgctgcaactcaagtccaagattggaaatcttgacgtcctgagtactattcacaccctcagcatcattcttctccttcaccaccaaatc |
36562747 |
T |
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| Q |
320 |
aatcttctccttcaactcatcaatcaccttca |
351 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
36562748 |
aatcttctccttcaactcatcaatcaccttca |
36562779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 298 - 353
Target Start/End: Complemental strand, 952176 - 952121
Alignment:
| Q |
298 |
tcttctccttcaccaccaaatcaatcttctccttcaactcatcaatcaccttcatc |
353 |
Q |
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||||||| | |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
952176 |
tcttctcatacaccaccaaaacaatcttctccttcaactcatcaatcaccttcatc |
952121 |
T |
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