View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6538_low_1 (Length: 306)
Name: NF6538_low_1
Description: NF6538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6538_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 45927514 - 45927808
Alignment:
| Q |
1 |
aagatttggttgtagagcaacatggaagcacgttttcgaatttccagtagataaagttgttattaaataggttaattaagaaccaccgtccatatgaaaa |
100 |
Q |
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| T |
45927514 |
aagatttggttgtagagcaacatggaagcacgttttcgaatttccagtagata--gttgttattaaataggttaattaagaaccaccgtccatatgaaaa |
45927611 |
T |
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| Q |
101 |
tgagaaatccaattctggttgttgaaaggttactttaacatcaaacacaatttcaaagtcaacaagttcacattcaatatctaaaaagtagaaatgagaa |
200 |
Q |
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| T |
45927612 |
tgagaaatccaattctggttgttgaaaggttactttaacatcaaacacaatttcaaagtcaacaagttcacattcaatatctaaaaagtagaaatgagaa |
45927711 |
T |
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| Q |
201 |
aacagaaatccaaatctaactagttacttaataagcatgttaaagatgttgtcaacctatgtttgcaaaagagtgtactatactgatatattttctt |
297 |
Q |
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| T |
45927712 |
aacagaaatcgaaacctaactagttacttaataagcatgttaaagatgttgtcaacctatgtttgcaaaagagtgtactatactgatatattttctt |
45927808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 76 - 282
Target Start/End: Original strand, 15806693 - 15806900
Alignment:
| Q |
76 |
ttaagaaccaccgtccatatgaaaatgagaaatccaattctggttgttgaaaggttactttaacatcaaacacaatttcaaagtcaacaagttcacattc |
175 |
Q |
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|||||||||| || ||||||||||||||||| |||| |||||||| |||| |||||||| ||||| |||||| ||| ||||||||||||||||||||| |
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| T |
15806693 |
ttaagaaccattgttcatatgaaaatgagaaaaccaactctggttgctgaattgttactttgacatccaacacagttttaaagtcaacaagttcacattc |
15806792 |
T |
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| Q |
176 |
aatatctaaaaagtagaaatgagaaaacagaaatccaaatctaactagttacttaata-agcatgttaaagatgttgtcaacctatgtttgcaaaagagt |
274 |
Q |
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| T |
15806793 |
aacatatacaaagtaaaaattagaaaacaaaaatggaatcctaactagttacttaatacatcatgtaaaagatgttgtcaactaatgtttgcagaagagt |
15806892 |
T |
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| Q |
275 |
gtactata |
282 |
Q |
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||||||| |
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| T |
15806893 |
atactata |
15806900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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