View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6539_high_2 (Length: 483)
Name: NF6539_high_2
Description: NF6539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6539_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 3 - 467
Target Start/End: Complemental strand, 3463533 - 3463069
Alignment:
| Q |
3 |
gaactaataaatggtgttagggctaatatagctgcttcacaagaagccaagaacatggctgttcatacaaagagagaaatctttgagaatgcaaagattc |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3463533 |
gaactaataaatggtgttagggctaatatagctgcttcacaagaagccaagaacatggttgttcatacaaagagagaaatctttgagaatgcaaagattc |
3463434 |
T |
|
| Q |
103 |
taaaagttcaaagagatgagttaagggaacaagtacattgcttgagagatgagcatgaattggctaagaaaatccaggaaaatattagagatgaatgggc |
202 |
Q |
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||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3463433 |
taaaagttcaaagagatgagttaaggggacaagtacattgtttgagagatgagcatgaattggctaagaaaatccaggcaaatattagagatgaatgggc |
3463334 |
T |
|
| Q |
203 |
aaagctaggtgaaaaatttagcaaggcggccaactaagggggtctagttgataaggagttgtcccatatctcgcaagcacatgaggtgaactcccgttgc |
302 |
Q |
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||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3463333 |
aaagctaggtgaaaaatttagcaaggctgccaactaaggtggtctagttgataaggagttgtcccatgtctcgcaagcacatgaggtgaactcccgttgc |
3463234 |
T |
|
| Q |
303 |
tggtctcaagatctcattggtggataatcaataagtatatttgtcttcgctctttgattttgagccttgacgcatgcccgaggaatcatgaaatttcaaa |
402 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3463233 |
tggtctcaagatctcgttggtggataatcaataagtatatttgtcttcactctttgattttgagccttgacgcctgcccgaggaatcatgaaatttcaaa |
3463134 |
T |
|
| Q |
403 |
aagtgggttcatagctttttactataaaatatttatacaaaagtatataaatgtatagaaaaaat |
467 |
Q |
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| T |
3463133 |
aagtgggttcttagctttttactataaaatatttatacaaaagtatataaatgtatagaaaaaat |
3463069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 3 - 347
Target Start/End: Original strand, 3449676 - 3450021
Alignment:
| Q |
3 |
gaactaataaatggtgttagggcta----atatagctgcttcacaagaagccaagaacatggctgttcatacaaagagagaaatctttgagaatgcaaag |
98 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||| ||||||||||||| | | ||||||||| | |||||| ||||||||||||||||| |
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| T |
3449676 |
gaactaataaatggtgttagggctagctaatatagctgcttcataagaagccaagaa-aacgttgttcatacca--agagaagtctttgagaatgcaaag |
3449772 |
T |
|
| Q |
99 |
attctaaaagttcaaagagatgagttaagggaacaagtacattgcttgagagatgagcatgaattggctaagaaaatccaggaaaatattagagatgaat |
198 |
Q |
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| T |
3449773 |
agtctaaaagttcatagagactagttaagggaacaagtacattgtttgagagatttgcatgaattggctaagaaaatacaggcaaatattagatatcaat |
3449872 |
T |
|
| Q |
199 |
gggcaaagctaggtgaaaaatttagcaaggcggccaactaagggggtctagttgataaggagttgtcccatatctcgcaagcacatgaggtgaactcccg |
298 |
Q |
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|| ||||||||||||||||||||||||| | ||| ||| ||||||||||||||||||||||| ||||||| |||| ||||||| | |||| ||| |
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| T |
3449873 |
ggtcaaagctaggtgaaaaatttagcaacactaccatctacaaaggtctagttgataaggagttgtcgcatatcttgcaatgacatgagttcaacttccg |
3449972 |
T |
|
| Q |
299 |
ttgctggtctcaagatctcattggtggataatcaataagtatatttgtc |
347 |
Q |
| |
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|| ||| || | ||| || || ||||||||| |||||||||||||| |
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| T |
3449973 |
gtgttggcctaaggatttcgttagtggataatttgtaagtatatttgtc |
3450021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 222
Target Start/End: Original strand, 29434655 - 29434784
Alignment:
| Q |
93 |
gcaaagattctaaaagttcaaagagatgagttaagggaacaagtacattgcttgagagatgagcatgaattggctaagaaaatccaggaaaatattagag |
192 |
Q |
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||||||| ||| |||| |||||||||||||| || |||||||| | | ||||| |||||| ||| |||| ||||||||||| ||||||||| || |
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| T |
29434655 |
gcaaagactctcaaagcacaaagagatgagttgagagaacaagttcctcacttgaaggatgagagggaagtggccaagaaaatccaagaaaatattcaag |
29434754 |
T |
|
| Q |
193 |
atgaatgggcaaagctaggtgaaaaattta |
222 |
Q |
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||||||| |||||| || |||||||||| |
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| T |
29434755 |
ctgaatggttaaagcttggagaaaaattta |
29434784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 347
Target Start/End: Complemental strand, 10180319 - 10180282
Alignment:
| Q |
310 |
aagatctcattggtggataatcaataagtatatttgtc |
347 |
Q |
| |
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|||||||| ||||||||||||| ||||||||||||||| |
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| T |
10180319 |
aagatctcgttggtggataatctataagtatatttgtc |
10180282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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