View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6539_high_3 (Length: 372)
Name: NF6539_high_3
Description: NF6539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6539_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 20 - 358
Target Start/End: Complemental strand, 14527933 - 14527597
Alignment:
| Q |
20 |
gtttgcaagataagttgtatcactttgaaaagaaaaaacagaatttcttactatgatgatataaatggtgtgatattctaggtttgctattattattaac |
119 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14527933 |
gtttgcaagataaattgtagcactttgaaaagaaaaaacagaatttcttactatgatgatataaatggtgtgatattctaggtttgctattattattaac |
14527834 |
T |
|
| Q |
120 |
aaatatagagataagctattaaatcttatacctcttcttttcttttgaatgtatctctgtttccagatataagctccaaaagttacggcaaccaccacaa |
219 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14527833 |
aaata--gagataagctattaaatcttatacctcttcttttcttttgaatgtatctctgtttccagatataagctccaaaagttacggcaaccaccacaa |
14527736 |
T |
|
| Q |
220 |
cgatcaccgaactaactactgcaacgactatcactactacattacctgtacaagtcaacaaattggattcatactcaagatttatcactactaggtttgt |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14527735 |
cgatcaccgaactaactactgcaacgactatcactactacattacctgtacaagtcaacaaattggattcatactcaagatttatcactactaggtttgt |
14527636 |
T |
|
| Q |
320 |
taatttttctcaatgcatgaacctacatcctagaataat |
358 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
14527635 |
taatttttctcaatgcatgaagctacatcctagcataat |
14527597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University