View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6539_high_5 (Length: 292)
Name: NF6539_high_5
Description: NF6539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6539_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 22 - 286
Target Start/End: Original strand, 2688264 - 2688528
Alignment:
| Q |
22 |
gtatgtcctggaactgcagcaaatttctatcactccataaagcccatgaaactactagcatcagttccagctgctcttcagcaaatttctggattggcta |
121 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2688264 |
gtatgtcctggaactgcaacaaatttctatcactccataaagcccatgaaactactagcatcagttccagctgctcttcagcaaatttctggattggcta |
2688363 |
T |
|
| Q |
122 |
ttgcatattgctactttatcttgtaagtttctttagataatcatagttgaaaaggtacctaattttgttcatttgtatcctttgtcatgccttactgttc |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2688364 |
ttgcatattgctactttatcttgtaagtttctttagataatcatagttgaaaaggtacctaattttgttcatttgtatcctttgtcatgccttactgttc |
2688463 |
T |
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| Q |
222 |
tagaattttaattcacaaatacattattgtttactacatttattctagagtgttaattcatctca |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2688464 |
tagaattttaattcacaaatacattattgtttactacatttattatagagtgttaattcatctca |
2688528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 4e-47; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 178 - 285
Target Start/End: Complemental strand, 367639 - 367532
Alignment:
| Q |
178 |
acctaattttgttcatttgtatcctttgtcatgccttactgttctagaattttaattcacaaatacattattgtttactacatttattctagagtgttaa |
277 |
Q |
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|||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
367639 |
acctaattttgttcatttatatcctttgtcatgcattacttttctagaattttaattcacaaatacattattgtttactacatttattctagagtgttaa |
367540 |
T |
|
| Q |
278 |
ttcatctc |
285 |
Q |
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|||||||| |
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| T |
367539 |
ttcatctc |
367532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 179
Target Start/End: Complemental strand, 38187269 - 38187239
Alignment:
| Q |
149 |
tttctttagataatcatagttgaaaaggtac |
179 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
38187269 |
tttctttagataatcatagttgaaaaggtac |
38187239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 179
Target Start/End: Original strand, 38211088 - 38211118
Alignment:
| Q |
149 |
tttctttagataatcatagttgaaaaggtac |
179 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
38211088 |
tttctttagataatcatagttgaaaaggtac |
38211118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 178 - 281
Target Start/End: Original strand, 6738643 - 6738746
Alignment:
| Q |
178 |
acctaattttgttcatttgtatcctttgtcatgccttactgttctagaattttaattcacaaatacattattgtttactacatttattctagagtgttaa |
277 |
Q |
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|||||| ||||||||||| | |||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||| || ||||| |
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| T |
6738643 |
acctaaatttgttcatttatgtcctttgtcatgccttgttgttctagaattttaattcaagtatacattattgtttagtacatttattctaaagggttaa |
6738742 |
T |
|
| Q |
278 |
ttca |
281 |
Q |
| |
|
|||| |
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|
| T |
6738743 |
ttca |
6738746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 1703996 - 1704043
Alignment:
| Q |
54 |
ctccataaagcccatgaaactactagcatcagttccagctgctcttca |
101 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1703996 |
ctccataaagcccatgcaactactagcatcagttccagctgctcttca |
1704043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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