View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6539_high_7 (Length: 238)
Name: NF6539_high_7
Description: NF6539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6539_high_7 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 3249449 - 3249669
Alignment:
| Q |
18 |
gtctccttccttgcattagtagtaaattcttttcaatcaatcaatagtactgtactgtttatatgtataagccaagcacaggaagttaagtacgtttacg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3249449 |
gtctccttccttgcattagtagtaaattcttttcaatcaatcaatagtactgtactgtttatatgtataagccaagcacaggaagttaagtacgtttacg |
3249548 |
T |
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| Q |
118 |
tgaatgacacaaattcttcttcttagctctattattacattaagtnnnnnnnnnnggctctattattacattgttcagttnnnnnnncgctctattccat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||| |||||||||||| |
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| T |
3249549 |
tgaatgacacaaattcttcttcttagctctattattacattaagtaaaaaaaaaaggctatattattacattgttcggttaaaaaaaagctctattccat |
3249648 |
T |
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| Q |
218 |
taagttcaggaacgtactcca |
238 |
Q |
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||||||||||||||||||||| |
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| T |
3249649 |
taagttcaggaacgtactcca |
3249669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 3243430 - 3243572
Alignment:
| Q |
18 |
gtctccttccttgcattagtagtaaattcttttcaatcaatcaatagtact---gtactgtttatatgtataagccaagcacaggaagttaagtacgttt |
114 |
Q |
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|||||||||||||||||||||||||| ||||||| || ||||||| | ||||||| ||| ||||||||| |||||| |||| |||||| ||||| |
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| T |
3243430 |
gtctccttccttgcattagtagtaaaaaaaattcaatctattaatagtagtaatgtactgtatatgtgtataagctaagcactggaaattaagtgcgttt |
3243529 |
T |
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| Q |
115 |
acgtgaatgacacaaattcttcttcttagctctattattacat |
157 |
Q |
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| T |
3243530 |
acgtgaatgacacaaattcttcttcttagctctattattacat |
3243572 |
T |
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