View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6539_low_1 (Length: 524)
Name: NF6539_low_1
Description: NF6539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6539_low_1 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 51 - 524
Target Start/End: Original strand, 30117671 - 30118145
Alignment:
| Q |
51 |
tgtgagcaaaccatttgaaaataaataatttgttaaaacgggaaacaaacattgaaaatgttgcctttatttcactttcttaggaataatattgcaaaac |
150 |
Q |
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| T |
30117671 |
tgtgagcaaaccatttgaaaataaataatttgttaaaacgggaaacaaacattgaaaatgttgcctttatttcactttcttaggaataatattgcaaaac |
30117770 |
T |
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| Q |
151 |
tttaaaacaaatacatttaaggcttttatagtggttttacgagactgtttttggtcattggcattgaatagtgacttcaccgattagagttattgattct |
250 |
Q |
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| T |
30117771 |
tttaaaacaaatacatttaaggcttttatagtggttttacgagactgtttttggtcattggcattgaatagtgacttccccgattagagttattgatttt |
30117870 |
T |
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| Q |
251 |
atttattcgttgtactttatgggataggatatccaaaatgctttgttaccaaatcatgaatgaccttagaaagtattagcaccctaataaagttgctgaa |
350 |
Q |
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| T |
30117871 |
atttattcggtatactttatgggatgggatatccaaaatgcttttttaccaaatcatgaatgaccttagaaagtattagcaccctaataaagttgctgaa |
30117970 |
T |
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| Q |
351 |
agaaaag-nnnnnnnnntgcaagagttaggaattatttaaacaaatccaattgcaacacctttgaacagccaaacaatatgccgttctcttcatatctag |
449 |
Q |
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| T |
30117971 |
agaaaagaaaaaaaaaatgcaagagttaggaattatttaaacaaatccaattgcaacacctttgaacagccaaacaatatgccgttctcttcatatctag |
30118070 |
T |
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| Q |
450 |
tagtttcacatggatttttattattcataatctacagtgaatattatgtattacgtaccaaaggttatagagttt |
524 |
Q |
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| T |
30118071 |
tagtttcacctggcgttttattattcataatccacagtgaatattatgtattatgtaccaatggttatagagttt |
30118145 |
T |
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