View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6539_low_7 (Length: 248)
Name: NF6539_low_7
Description: NF6539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6539_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 14527512 - 14527273
Alignment:
| Q |
1 |
ttggagtacctcatgaagcatccggtgttgagcgcccgtccttctgacgagggcagacatctcaaaatagaagatgatgcatgctcgagacatgctttgc |
100 |
Q |
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| T |
14527512 |
ttggagtacctcatgaagcatccggtgttgagcgcccgtccttctgacgagggcagacatctcaaaatagaagatgacgcatgctcgagacatgctttgc |
14527413 |
T |
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| Q |
101 |
aagacttagaatccaaacttctctaacaatcagccagaacataagcagattcattcgatgttcctgatacaactactttccctctggcatagcctttatt |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14527412 |
aagacttagaatccaaacttctccaacaatcagccagaacataagcagattcattcgatgttcctgatacaactactttccctctggcatagcctttatt |
14527313 |
T |
|
| Q |
201 |
tttcggtgcatctcgaaccgctc-ttaacactgcctcctt |
239 |
Q |
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||||||||||||||||||||||| |||||||||||||||| |
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| T |
14527312 |
tttcggtgcatctcgaaccgctctttaacactgcctcctt |
14527273 |
T |
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