View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6540_high_1 (Length: 793)
Name: NF6540_high_1
Description: NF6540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6540_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 534; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 6 - 612
Target Start/End: Original strand, 1387481 - 1388078
Alignment:
| Q |
6 |
gtcgaagaatatgtcataaaaaagtaacaatattagtttatcctatagtcatatagtttggtaaagatggcaaagttacacctacaacaaagaacatata |
105 |
Q |
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| T |
1387481 |
gtcgaagaaaatgtcatcaaaaagtaacaatattagtttatcctatagtcatatagtttggtaaagatggcaaagttacatctacaacaaagaacatata |
1387580 |
T |
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| Q |
106 |
tattcccttgaaagctttcaaaacccaccgtcatttgtgaaacataggaatataaaagttaatgagaaaaagggtttgagagagacaaagggacccatca |
205 |
Q |
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| T |
1387581 |
tattcccttgaaagctttcaaaacccaccgtcatttgtgaaacataggaatatgaaagttaatgagaaaaagggtttgagagagacaaagggacccatca |
1387680 |
T |
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| Q |
206 |
aatgtttgatgctccactccaccatcatgtaattttggaagactttagaatttgataggagaggcaatcattgtttcatagaattcagtgcattcatata |
305 |
Q |
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| T |
1387681 |
aatgtttgatgctccactccaccatcatgtaattttggaagactttagaatttgataggagaggcaatcattgtttcatagaattcagtgcattcatata |
1387780 |
T |
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| Q |
306 |
ctttctttcacacccacaaatcgtatccctcttttgcggattatttttattacactttagaactatgtatttatttataaatcatgaatatgttatgtag |
405 |
Q |
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| T |
1387781 |
ctttctttcacacccacaaatcgtatccctcttttgcggattatttttattacactttagaactaagtatgtatttataaatcatgaa-----tatgtag |
1387875 |
T |
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| Q |
406 |
ggtatatatgtatgtgtcctttcttattttctcctccttcaaatcaaatacatgctgcatgttgtatggcctagtttacgttgtaaccatattgaaataa |
505 |
Q |
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| T |
1387876 |
gg----tatgtatgtctcctttcttattttctcctccttcaaatcaaatacatgctgcatgttgtatggcctagtttacgttgtaaccatattgaaataa |
1387971 |
T |
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| Q |
506 |
ttgcttctagttctatatgtttacaacaatttttggtctatgaaaagtcaaccaaattcaaaacacaatataagctgcaggtgtaaacttaattaaaatc |
605 |
Q |
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| T |
1387972 |
ttgcttctagttctatacgtttacaacaatttttggtctatgaaaagtcaaccaaatccaaaacacaatataagctgcaggtgtaaacttaattaaaatc |
1388071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 618 - 773
Target Start/End: Original strand, 1407139 - 1407294
Alignment:
| Q |
618 |
atattgaacaataagaatcataaaatttcaattttaaatgttgaaatttcatgttcaaaaacagcagcacatacccttggtaaagcatgataataataat |
717 |
Q |
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| T |
1407139 |
atattgaacaataagagtcataaaatttcaattttaaatgttgaaattttatgttcaaaaacagcagcacatacccttggtaaagcatgataataataat |
1407238 |
T |
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| Q |
718 |
tccaccttatcatgtcaccgtatatattgacaataaccaaaagtgtaaaagtagat |
773 |
Q |
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| T |
1407239 |
tccaccttatcatgtcaccgtatatattgacaataaccaaaagtgtaaaagtagat |
1407294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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