View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6540_high_12 (Length: 447)
Name: NF6540_high_12
Description: NF6540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6540_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 162 - 349
Target Start/End: Complemental strand, 30344119 - 30343932
Alignment:
| Q |
162 |
taaaccaacgggtgatagtaatgacttaacacactgacaaattgcattgtttaagaacattgctgctttgtcatctattttgtttgtgtgtattgtatag |
261 |
Q |
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| T |
30344119 |
taaaccaacgggtgataataatgacttaacacactgacaaattgcattgtttaagaacattgctgctttgtcatctattttgtttgtgtgtattgtatag |
30344020 |
T |
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| Q |
262 |
tgctttcactttttgattcttttcctgattcctaatgctaaaattaacaaaaacgattcataatgcattttggtccgtttataaactt |
349 |
Q |
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| T |
30344019 |
tgcattcactttttgattcttttcctgattcctaatgctaaaattaacaaaaacgattcataatgcattttggtccgtatataaactt |
30343932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 382 - 432
Target Start/End: Complemental strand, 30343902 - 30343852
Alignment:
| Q |
382 |
ctgaaagttgatggtttaaccaagcatttctatacactctttcgcagaagt |
432 |
Q |
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| T |
30343902 |
ctgaaagttgatggtttaaccaagcatttctatacactctttcgcagaagt |
30343852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 86
Target Start/End: Original strand, 27061116 - 27061157
Alignment:
| Q |
45 |
aatataatagcttactagtatagtttgttttttgaaaaagtt |
86 |
Q |
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| T |
27061116 |
aatataatagcatactagtatagtttgtttttttaaaaagtt |
27061157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 86
Target Start/End: Original strand, 27082227 - 27082268
Alignment:
| Q |
45 |
aatataatagcttactagtatagtttgttttttgaaaaagtt |
86 |
Q |
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| T |
27082227 |
aatataatagcatactagtatagtttgtttttttaaaaagtt |
27082268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 12891841 - 12891764
Alignment:
| Q |
1 |
caatatcgtataaa-gttcacaaaaaatagatactgagaccaaacaatataatagcttactagtatagtttgtttttt |
77 |
Q |
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| T |
12891841 |
caatatcgtataaaagttcacaaaaaataaatattgagactgaaaaatacaataacatactactatagtttttttttt |
12891764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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