View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6540_high_15 (Length: 437)

Name: NF6540_high_15
Description: NF6540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6540_high_15
NF6540_high_15
[»] chr7 (26 HSPs)
chr7 (1-415)||(30075337-30075752)
chr7 (43-90)||(37005962-37006009)
chr7 (43-93)||(33359241-33359291)
chr7 (45-86)||(5280862-5280903)
chr7 (43-87)||(4477472-4477516)
chr7 (43-86)||(4347275-4347318)
chr7 (43-86)||(20346490-20346533)
chr7 (43-86)||(30181175-30181218)
chr7 (43-86)||(33846675-33846718)
chr7 (43-86)||(42204156-42204199)
chr7 (39-85)||(15655559-15655605)
chr7 (43-93)||(22649845-22649895)
chr7 (46-86)||(15655914-15655954)
chr7 (43-83)||(42965147-42965187)
chr7 (43-86)||(3511325-3511368)
chr7 (43-86)||(7164186-7164229)
chr7 (43-86)||(32041544-32041587)
chr7 (43-86)||(46134455-46134498)
chr7 (43-85)||(1803029-1803071)
chr7 (45-95)||(6394744-6394794)
chr7 (43-89)||(42673464-42673510)
chr7 (45-83)||(43156718-43156756)
chr7 (45-86)||(9452592-9452633)
chr7 (43-83)||(12101329-12101369)
chr7 (43-95)||(37704973-37705025)
chr7 (43-83)||(43021727-43021767)
[»] chr1 (30 HSPs)
chr1 (1-85)||(5217902-5217986)
chr1 (34-86)||(5675106-5675158)
chr1 (43-91)||(42370956-42371004)
chr1 (43-86)||(1168504-1168547)
chr1 (43-86)||(5215386-5215429)
chr1 (43-86)||(8079870-8079913)
chr1 (43-86)||(19715322-19715365)
chr1 (43-86)||(20089472-20089515)
chr1 (43-86)||(26663259-26663302)
chr1 (43-86)||(33510485-33510528)
chr1 (43-86)||(39260507-39260550)
chr1 (43-90)||(43905651-43905698)
chr1 (43-86)||(52696792-52696835)
chr1 (43-86)||(52753308-52753351)
chr1 (43-93)||(23498454-23498504)
chr1 (43-88)||(8120868-8120913)
chr1 (45-86)||(26580433-26580474)
chr1 (43-84)||(29078519-29078560)
chr1 (43-91)||(970687-970735)
chr1 (43-95)||(16052088-16052140)
chr1 (43-86)||(1170605-1170648)
chr1 (43-86)||(1940908-1940951)
chr1 (43-86)||(29288150-29288193)
chr1 (43-90)||(38829066-38829113)
chr1 (43-84)||(29695678-29695719)
chr1 (43-84)||(40092494-40092535)
chr1 (45-90)||(46409432-46409477)
chr1 (43-95)||(15203104-15203156)
chr1 (55-95)||(49146164-49146204)
chr1 (43-91)||(51359377-51359425)
[»] chr5 (16 HSPs)
chr5 (7-86)||(25634586-25634665)
chr5 (43-95)||(24105832-24105884)
chr5 (43-86)||(8374499-8374542)
chr5 (43-86)||(9008218-9008261)
chr5 (43-86)||(19358530-19358573)
chr5 (43-86)||(27679330-27679373)
chr5 (43-83)||(1165762-1165802)
chr5 (43-95)||(33491357-33491409)
chr5 (43-86)||(1579040-1579083)
chr5 (43-86)||(1605732-1605775)
chr5 (43-86)||(27420862-27420905)
chr5 (43-90)||(31883144-31883191)
chr5 (43-86)||(35782805-35782848)
chr5 (43-84)||(3386647-3386688)
chr5 (29-86)||(4120941-4120998)
chr5 (43-84)||(38598611-38598652)
[»] chr3 (20 HSPs)
chr3 (43-97)||(20842495-20842549)
chr3 (43-93)||(25999379-25999429)
chr3 (43-86)||(8042605-8042648)
chr3 (43-86)||(15520289-15520332)
chr3 (43-86)||(20699147-20699190)
chr3 (43-86)||(22175137-22175180)
chr3 (43-86)||(29445486-29445529)
chr3 (43-86)||(37698290-37698333)
chr3 (43-86)||(42308052-42308095)
chr3 (43-86)||(50528927-50528970)
chr3 (43-86)||(54534473-54534516)
chr3 (45-103)||(25494434-25494492)
chr3 (43-86)||(15520634-15520677)
chr3 (43-86)||(35643215-35643258)
chr3 (43-86)||(38856091-38856134)
chr3 (43-86)||(38933944-38933986)
chr3 (43-86)||(49128047-49128090)
chr3 (45-86)||(12117807-12117848)
chr3 (43-84)||(21581042-21581083)
chr3 (43-84)||(44609480-44609521)
[»] chr4 (29 HSPs)
chr4 (33-86)||(54189546-54189599)
chr4 (43-97)||(23776608-23776662)
chr4 (45-86)||(1617085-1617126)
chr4 (45-86)||(15669184-15669225)
chr4 (43-92)||(19913779-19913828)
chr4 (45-86)||(44375846-44375887)
chr4 (43-87)||(16700781-16700825)
chr4 (46-86)||(30171581-30171621)
chr4 (43-87)||(53875657-53875701)
chr4 (43-86)||(2481557-2481600)
chr4 (43-86)||(19165121-19165164)
chr4 (43-86)||(20877048-20877091)
chr4 (43-86)||(23265906-23265949)
chr4 (33-84)||(23704348-23704399)
chr4 (43-86)||(44785066-44785109)
chr4 (43-86)||(50055250-50055293)
chr4 (43-86)||(50353802-50353845)
chr4 (43-86)||(53717613-53717656)
chr4 (43-86)||(54412629-54412672)
chr4 (43-93)||(38055151-38055201)
chr4 (33-90)||(43290099-43290156)
chr4 (43-95)||(14987784-14987836)
chr4 (43-86)||(1756913-1756956)
chr4 (43-86)||(8932327-8932370)
chr4 (43-86)||(30423713-30423756)
chr4 (43-85)||(15241177-15241219)
chr4 (45-86)||(37464722-37464763)
chr4 (43-84)||(48909849-48909890)
chr4 (43-95)||(45424683-45424735)
[»] chr8 (27 HSPs)
chr8 (1-85)||(18683714-18683798)
chr8 (1-85)||(18729276-18729360)
chr8 (43-86)||(22260791-22260834)
chr8 (43-86)||(28639281-28639324)
chr8 (43-91)||(5320562-5320610)
chr8 (43-91)||(35118192-35118240)
chr8 (43-86)||(13110407-13110450)
chr8 (43-86)||(18594540-18594583)
chr8 (43-86)||(34842526-34842569)
chr8 (43-86)||(39206589-39206632)
chr8 (43-86)||(39218780-39218823)
chr8 (43-85)||(2042685-2042727)
chr8 (43-85)||(10836916-10836958)
chr8 (43-93)||(14422699-14422749)
chr8 (43-85)||(26783894-26783936)
chr8 (43-84)||(5005171-5005212)
chr8 (43-92)||(41575510-41575559)
chr8 (43-91)||(29938059-29938107)
chr8 (43-86)||(7791414-7791457)
chr8 (43-86)||(8021722-8021765)
chr8 (43-86)||(24113327-24113370)
chr8 (43-86)||(40118013-40118056)
chr8 (45-83)||(36491163-36491201)
chr8 (43-85)||(42571598-42571640)
chr8 (43-96)||(144387-144440)
chr8 (43-100)||(6144434-6144491)
chr8 (43-84)||(34679618-34679659)
[»] chr6 (15 HSPs)
chr6 (34-86)||(52839-52891)
chr6 (43-86)||(33463704-33463747)
chr6 (43-95)||(20726785-20726837)
chr6 (43-86)||(2837548-2837591)
chr6 (43-86)||(3347684-3347727)
chr6 (43-86)||(6086760-6086803)
chr6 (43-86)||(17261234-17261277)
chr6 (43-85)||(30691855-30691897)
chr6 (43-96)||(3955927-3955980)
chr6 (45-86)||(9459566-9459607)
chr6 (43-86)||(26947037-26947080)
chr6 (48-86)||(11167243-11167281)
chr6 (43-79)||(1153603-1153639)
chr6 (34-82)||(12835055-12835102)
chr6 (43-95)||(26704500-26704552)
[»] chr2 (16 HSPs)
chr2 (45-90)||(42937716-42937761)
chr2 (43-95)||(30270840-30270892)
chr2 (43-86)||(4016040-4016083)
chr2 (43-86)||(6174989-6175032)
chr2 (41-84)||(12517343-12517385)
chr2 (43-86)||(18807045-18807088)
chr2 (43-86)||(30420328-30420371)
chr2 (43-85)||(3873405-3873447)
chr2 (43-93)||(31517376-31517426)
chr2 (43-87)||(1483063-1483107)
chr2 (43-86)||(850998-851041)
chr2 (43-86)||(4232303-4232346)
chr2 (43-90)||(16588937-16588984)
chr2 (43-86)||(19901298-19901341)
chr2 (44-86)||(28329999-28330041)
chr2 (43-99)||(26323347-26323403)
[»] scaffold0012 (1 HSPs)
scaffold0012 (43-86)||(36706-36749)
[»] scaffold0482 (1 HSPs)
scaffold0482 (43-86)||(456-499)
[»] scaffold0167 (1 HSPs)
scaffold0167 (43-86)||(23112-23155)


Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 30075337 - 30075752
Alignment:
Q  1 attttgattatttacccaagagcatctgaaagggcttttgttagtagataagctcacataagcttaaaataagccaatccaaacggagccatagtttaag 100  Q
    ||||| |||||||||||||  | |||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||    
T  30075337 atttttattatttacccaaacgtatctgaaagggcttatgttagtagataaactcacataagcttaaaataagtcaatccaaacggggccatagtttaag 30075436  T
Q  101 tttatttaactatacactatttgtttgattttgcatcattacacgactcacactaccaaaactttgtgcaa-gtaggggcaatggagaatgacctagtag 199  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  30075437 ttcatttaactatacactatttgtttgattttgcatcattacacgactcacactaccaaaactttgtgcaaagtaggggcaatggagtatgacctagtag 30075536  T
Q  200 cgttccacacatacttcttggaatccttaaagagttatatgggggacaccaatacaaaagtaaaagacgatccaccggcttgtgatgtaaaatctcgtta 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  30075537 cgttccacacatacttcttggaatccttaaagagttatatgggggacaccaatacaaaagtaaaagacgatctaccggcttgtgatgtaaaatctcgtta 30075636  T
Q  300 actttgatgcaccattggagcctaagcttgtagatgaagatggggaaggtttgcccccatgatgtaagaaagaggttggaaagaccagaacctaatggtg 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30075637 actttgatgcaccattggagcctaagcttgtagatgaagatggggaaggtttgcccccatgatgtaagaaagaggttggaaagaccagaacctaatggtg 30075736  T
Q  400 tatttatcgtaaagac 415  Q
    |||||||||| |||||    
T  30075737 tatttatcgtcaagac 30075752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 43 - 90
Target Start/End: Original strand, 37005962 - 37006009
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacggagcc 90  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  37005962 agtagataaactcacataagcttaaaataagccaatccaaacggagcc 37006009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 43 - 93
Target Start/End: Original strand, 33359241 - 33359291
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacggagccata 93  Q
    ||||||||||| |||||||||| ||||||||||||||||||||| ||||||    
T  33359241 agtagataagcccacataagctcaaaataagccaatccaaacggggccata 33359291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 5280903 - 5280862
Alignment:
Q  45 tagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  5280903 tagataagctcacataagctcaaaataagccaatccaaacgg 5280862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 4477472 - 4477516
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgga 87  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||    
T  4477472 agtagataagcccacataagctcaaaataagccaatccaaacgga 4477516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 4347318 - 4347275
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||    
T  4347318 agtagataagcccacataagcttaaaataagtcaatccaaacgg 4347275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 20346533 - 20346490
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| |||||||||| |||||||||||||||||||||    
T  20346533 agtagataagcccacataagctcaaaataagccaatccaaacgg 20346490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 30181175 - 30181218
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| |||||||||| |||||||||||||||||||||    
T  30181175 agtagataagcccacataagctcaaaataagccaatccaaacgg 30181218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 33846675 - 33846718
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| |||||||||| |||||||||||||||||||||    
T  33846675 agtagataagcccacataagctcaaaataagccaatccaaacgg 33846718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 42204199 - 42204156
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| |||||||||| |||||||||||||||||||||    
T  42204199 agtagataagcccacataagctcaaaataagccaatccaaacgg 42204156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 85
Target Start/End: Original strand, 15655559 - 15655605
Alignment:
Q  39 tgttagtagataagctcacataagcttaaaataagccaatccaaacg 85  Q
    |||||||||| ||||||||||||| ||| ||||||||||||||||||    
T  15655559 tgttagtagacaagctcacataagtttagaataagccaatccaaacg 15655605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 93
Target Start/End: Original strand, 22649845 - 22649895
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacggagccata 93  Q
    ||||||||||| |||||||||| ||||||||||||| ||||||| ||||||    
T  22649845 agtagataagcccacataagctcaaaataagccaattcaaacggggccata 22649895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 15655954 - 15655914
Alignment:
Q  46 agataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    |||||||| |||||||||| |||||||||||||||||||||    
T  15655954 agataagcccacataagctcaaaataagccaatccaaacgg 15655914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 83
Target Start/End: Original strand, 42965147 - 42965187
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaa 83  Q
    ||||||||||| |||||||||| ||||||||||||||||||    
T  42965147 agtagataagcccacataagctcaaaataagccaatccaaa 42965187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 3511368 - 3511325
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| |||||||||| |||||||| ||||||||||||    
T  3511368 agtagataagcccacataagctcaaaataagacaatccaaacgg 3511325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 7164229 - 7164186
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| || ||||||| |||||||||||||||||||||    
T  7164229 agtagataagcccatataagctcaaaataagccaatccaaacgg 7164186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 32041587 - 32041544
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| |||||||||  |||||||||||||||||||||    
T  32041587 agtagataagcccacataagcacaaaataagccaatccaaacgg 32041544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 46134455 - 46134498
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||| |||||||||||| |||||||| ||||||||||||    
T  46134455 agtagataaactcacataagctcaaaataagtcaatccaaacgg 46134498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 85
Target Start/End: Complemental strand, 1803071 - 1803029
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacg 85  Q
    ||||||||||| |||||||||| |||||||| |||||||||||    
T  1803071 agtagataagcccacataagctcaaaataagtcaatccaaacg 1803029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 95
Target Start/End: Complemental strand, 6394794 - 6394744
Alignment:
Q  45 tagataagctcacataagcttaaaataagccaatccaaacggagccatagt 95  Q
    ||||||||| |||||||||| |||||||||||||| |||||| ||| ||||    
T  6394794 tagataagcccacataagctcaaaataagccaatctaaacggggccttagt 6394744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 89
Target Start/End: Complemental strand, 42673510 - 42673464
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacggagc 89  Q
    ||||||||||| ||||||||||  ||||||| |||||||||||||||    
T  42673510 agtagataagcccacataagctccaaataagtcaatccaaacggagc 42673464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 83
Target Start/End: Complemental strand, 43156756 - 43156718
Alignment:
Q  45 tagataagctcacataagcttaaaataagccaatccaaa 83  Q
    ||||||||| |||||||||| ||||||||||||||||||    
T  43156756 tagataagcccacataagctcaaaataagccaatccaaa 43156718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 9452633 - 9452592
Alignment:
Q  45 tagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    |||||||| ||||||||||| |||||||| ||||||||||||    
T  9452633 tagataagttcacataagctcaaaataagtcaatccaaacgg 9452592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 83
Target Start/End: Original strand, 12101329 - 12101369
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaa 83  Q
    ||||||||| | |||||||||| ||||||||||||||||||    
T  12101329 agtagataaacccacataagctcaaaataagccaatccaaa 12101369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 37705025 - 37704973
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacggagccatagt 95  Q
    ||||||||||| |||||||||| |||||||| ||| |||||||| ||| ||||    
T  37705025 agtagataagcccacataagctcaaaataagtcaacccaaacggggccttagt 37704973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 83
Target Start/End: Original strand, 43021727 - 43021767
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaa 83  Q
    ||||||||||  ||||||| |||||||||||||||||||||    
T  43021727 agtagataagtccacataaacttaaaataagccaatccaaa 43021767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 5217902 - 5217986
Alignment:
Q  1 attttgattatttacccaagagcatctgaaagggcttttgttagtagataagctcacataagcttaaaataagccaatccaaacg 85  Q
    ||||| |||||||||||||  | || |||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  5217902 atttttattatttacccaaatgtatttgaaagagcttatgttagtagataagctctcataagcttaaaataagccaatccaaacg 5217986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 5675158 - 5675106
Alignment:
Q  34 gcttttgttagtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  5675158 gcttatgttagtagataagctaacataagcttaaaataagccaatccaaacgg 5675106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 42370956 - 42371004
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacggagcca 91  Q
    |||||||||||||||||||||| |||||||| |||||||||||| ||||    
T  42370956 agtagataagctcacataagctcaaaataagtcaatccaaacggggcca 42371004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 1168547 - 1168504
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| |||||||||| |||||||||||||||||||||    
T  1168547 agtagataagcccacataagctcaaaataagccaatccaaacgg 1168504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 5215429 - 5215386
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| |||||||||| |||||||||||||||||||||    
T  5215429 agtagataagcccacataagctcaaaataagccaatccaaacgg 5215386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 8079870 - 8079913
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| |||||||||| |||||||||||||||||||||    
T  8079870 agtagataagcccacataagctcaaaataagccaatccaaacgg 8079913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 19715322 - 19715365
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    |||||||||||||||||||||| ||||||| |||||||||||||    
T  19715322 agtagataagctcacataagctcaaaataaaccaatccaaacgg 19715365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 20089515 - 20089472
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| |||||||||| |||||||||||||||||||||    
T  20089515 agtagataagcccacataagctcaaaataagccaatccaaacgg 20089472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 26663302 - 26663259
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| |||||||||| |||||||||||||||||||||    
T  26663302 agtagataagcccacataagctcaaaataagccaatccaaacgg 26663259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 33510528 - 33510485
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    |||||||||||||| ||||||| |||||||||||||||||||||    
T  33510528 agtagataagctcatataagctcaaaataagccaatccaaacgg 33510485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 39260507 - 39260550
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| |||||||||| |||||||||||||||||||||    
T  39260507 agtagataagcccacataagctcaaaataagccaatccaaacgg 39260550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 90
Target Start/End: Complemental strand, 43905698 - 43905651
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacggagcc 90  Q
    ||||||||||| || ||||||| |||||||||||||||||||||||||    
T  43905698 agtagataagcccaaataagctcaaaataagccaatccaaacggagcc 43905651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 52696835 - 52696792
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| |||||||||| |||||||||||||||||||||    
T  52696835 agtagataagcccacataagctcaaaataagccaatccaaacgg 52696792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 52753308 - 52753351
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| |||||||||| |||||||||||||||||||||    
T  52753308 agtagataagcccacataagctcaaaataagccaatccaaacgg 52753351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 93
Target Start/End: Complemental strand, 23498504 - 23498454
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacggagccata 93  Q
    ||||||||||| |||||||||||||||||||||||| ||||| | ||||||    
T  23498504 agtagataagcccacataagcttaaaataagccaattcaaacagggccata 23498454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 8120913 - 8120868
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacggag 88  Q
    ||||||||||  |||||||||| |||||||||||||||||||||||    
T  8120913 agtagataagtccacataagctcaaaataagccaatccaaacggag 8120868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 86
Target Start/End: Original strand, 26580433 - 26580474
Alignment:
Q  45 tagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||| |||||||||| |||||||||||||||||||||    
T  26580433 tagataagcccacataagctcaaaataagccaatccaaacgg 26580474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 29078560 - 29078519
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaac 84  Q
    ||||||||||| |||||||||| |||||||||||||||||||    
T  29078560 agtagataagcccacataagctcaaaataagccaatccaaac 29078519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 970687 - 970735
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacggagcca 91  Q
    ||||||||||| |||||||||| |||||||| |||||||||||| ||||    
T  970687 agtagataagcccacataagctcaaaataagtcaatccaaacggggcca 970735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 16052140 - 16052088
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacggagccatagt 95  Q
    ||||||||||| ||||||| || ||||||||||||||||||||| ||| ||||    
T  16052140 agtagataagcccacataaactcaaaataagccaatccaaacggggccttagt 16052088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 1170605 - 1170648
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| |||| ||||| |||||||||||||||||||||    
T  1170605 agtagataagcccacaaaagctcaaaataagccaatccaaacgg 1170648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 1940908 - 1940951
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| || ||||||| |||||||||||||||||||||    
T  1940908 agtagataagcccatataagctcaaaataagccaatccaaacgg 1940951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 29288193 - 29288150
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| |||||||||| |||||||| ||||||||||||    
T  29288193 agtagataagcccacataagctcaaaataagtcaatccaaacgg 29288150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 90
Target Start/End: Complemental strand, 38829113 - 38829066
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacggagcc 90  Q
    |||||||||||  ||||||||| ||||||||||||||||||| |||||    
T  38829113 agtagataagccgacataagctcaaaataagccaatccaaacagagcc 38829066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 29695719 - 29695678
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaac 84  Q
    ||||||||||| ||| |||||| |||||||||||||||||||    
T  29695719 agtagataagcccacgtaagctcaaaataagccaatccaaac 29695678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 40092535 - 40092494
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaac 84  Q
    |||||||||||||| ||||||| |||||||| ||||||||||    
T  40092535 agtagataagctcatataagctcaaaataagtcaatccaaac 40092494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 46409477 - 46409432
Alignment:
Q  45 tagataagctcacataagcttaaaataagccaatccaaacggagcc 90  Q
    ||||||||  |||||||||| |||||||| ||||||||||||||||    
T  46409477 tagataagtccacataagctcaaaataagtcaatccaaacggagcc 46409432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 15203156 - 15203104
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacggagccatagt 95  Q
    ||||||||| | |||| |||||||||||||| |||| ||||||| ||||||||    
T  15203156 agtagataaacccacaaaagcttaaaataagtcaattcaaacggggccatagt 15203104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 49146204 - 49146164
Alignment:
Q  55 cacataagcttaaaataagccaatccaaacggagccatagt 95  Q
    |||||||||| ||||||| ||||||||||||||||| ||||    
T  49146204 cacataagctcaaaataaaccaatccaaacggagccttagt 49146164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 51359377 - 51359425
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacggagcca 91  Q
    |||| |||||| | |||||||| ||||||||||||||||||||| ||||    
T  51359377 agtaaataagcccgcataagctcaaaataagccaatccaaacggggcca 51359425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 25634665 - 25634586
Alignment:
Q  7 attatttacccaagagcatctgaaagggcttttgttagtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    |||||||||||||  | || |||||| |||| ||||||||||||| ||| ||||||||||||||||||||||| ||||||    
T  25634665 attatttacccaaacgtatttgaaagagcttatgttagtagataaactctcataagcttaaaataagccaatctaaacgg 25634586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 24105832 - 24105884
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacggagccatagt 95  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||| ||||    
T  24105832 agtagataagcccacataagctcaaaataagccaatccaaacggagccttagt 24105884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 8374499 - 8374542
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||    
T  8374499 agtagataagcccacataagcttaaaataaggcaatccaaacgg 8374542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 9008218 - 9008261
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| |||||||||| |||||||||||||||||||||    
T  9008218 agtagataagcccacataagctcaaaataagccaatccaaacgg 9008261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 19358573 - 19358530
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    |||||||||||||||||||||| |||||||| ||||||||||||    
T  19358573 agtagataagctcacataagctcaaaataaggcaatccaaacgg 19358530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 27679330 - 27679373
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| |||||||||| |||||||||||||||||||||    
T  27679330 agtagataagcccacataagctcaaaataagccaatccaaacgg 27679373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 83
Target Start/End: Original strand, 1165762 - 1165802
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaa 83  Q
    |||||||||||||||||||||| |||||||| |||||||||    
T  1165762 agtagataagctcacataagctcaaaataagtcaatccaaa 1165802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 33491357 - 33491409
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacggagccatagt 95  Q
    ||||||||| | |||||||||| ||||||||||||||||||||| ||| ||||    
T  33491357 agtagataaacccacataagctcaaaataagccaatccaaacggggccttagt 33491409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 1579083 - 1579040
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| || ||||||| |||||||||||||||||||||    
T  1579083 agtagataagcccatataagctcaaaataagccaatccaaacgg 1579040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 1605732 - 1605775
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| || ||||||| |||||||||||||||||||||    
T  1605732 agtagataagcccatataagctcaaaataagccaatccaaacgg 1605775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 27420905 - 27420862
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| || ||||||| |||||||||||||||||||||    
T  27420905 agtagataagcccatataagctcaaaataagccaatccaaacgg 27420862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 90
Target Start/End: Complemental strand, 31883191 - 31883144
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacggagcc 90  Q
    ||||||||||  |||||||||| |||||||| ||||||||||||||||    
T  31883191 agtagataagtccacataagctcaaaataagtcaatccaaacggagcc 31883144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 35782805 - 35782848
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| |||||||||| |||||||| ||||||||||||    
T  35782805 agtagataagcccacataagctcaaaataaggcaatccaaacgg 35782848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 3386647 - 3386688
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaac 84  Q
    ||||||||||  |||||||||| |||||||||||||||||||    
T  3386647 agtagataagtccacataagctcaaaataagccaatccaaac 3386688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 86
Target Start/End: Complemental strand, 4120998 - 4120941
Alignment:
Q  29 aaagggcttttgttagtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||| ||  ||||||||| | |||||||||| ||||||||||| |||||||||    
T  4120998 aaagggcttatgggagtagataaacccacataagctcaaaataagccattccaaacgg 4120941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 38598611 - 38598652
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaac 84  Q
    |||||||||||||||||||| | ||| |||||||||||||||    
T  38598611 agtagataagctcacataagttcaaagtaagccaatccaaac 38598652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 20842495 - 20842549
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacggagccatagttt 97  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||    
T  20842495 agtagataagctcacataagctcaaaataagccaatccaaacggggccttagttt 20842549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 43 - 93
Target Start/End: Complemental strand, 25999429 - 25999379
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacggagccata 93  Q
    ||||||||||| |||||||||| ||||||||||||||||||||| ||||||    
T  25999429 agtagataagcccacataagctcaaaataagccaatccaaacggggccata 25999379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 8042648 - 8042605
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    |||||||||||||||||||||| |||||||||| ||||||||||    
T  8042648 agtagataagctcacataagctcaaaataagcccatccaaacgg 8042605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 15520289 - 15520332
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| |||||||||| |||||||||||||||||||||    
T  15520289 agtagataagcccacataagctcaaaataagccaatccaaacgg 15520332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 20699190 - 20699147
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| |||||||||| |||||||||||||||||||||    
T  20699190 agtagataagcccacataagctcaaaataagccaatccaaacgg 20699147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 22175137 - 22175180
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| |||||||||| |||||||||||||||||||||    
T  22175137 agtagataagcccacataagctcaaaataagccaatccaaacgg 22175180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 29445529 - 29445486
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||| |||||||||||| |||||||||||||||||||||    
T  29445529 agtagataaactcacataagctcaaaataagccaatccaaacgg 29445486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 37698290 - 37698333
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| |||||||||| |||||||||||||||||||||    
T  37698290 agtagataagcccacataagctcaaaataagccaatccaaacgg 37698333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 42308052 - 42308095
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| |||||||||| |||||||||||||||||||||    
T  42308052 agtagataagcccacataagctcaaaataagccaatccaaacgg 42308095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 50528970 - 50528927
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| |||||||||| |||||||||||||||||||||    
T  50528970 agtagataagcccacataagctcaaaataagccaatccaaacgg 50528927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 54534473 - 54534516
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| |||||||||| |||||||||||||||||||||    
T  54534473 agtagataagcccacataagctcaaaataagccaatccaaacgg 54534516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 25494434 - 25494492
Alignment:
Q  45 tagataagctcacataagcttaaaataagccaatccaaacggagccatagtttaagttt 103  Q
    ||||||| | |||||||||| |||||||| |||||||||||| |||||||| |||||||    
T  25494434 tagataaacccacataagctcaaaataagtcaatccaaacggggccatagtataagttt 25494492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 15520677 - 15520634
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||| | |||||||||| |||||||||||||||||||||    
T  15520677 agtagataaacccacataagctcaaaataagccaatccaaacgg 15520634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 35643258 - 35643215
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    |||||||||| ||||||||||| |||||||| ||||||||||||    
T  35643258 agtagataagttcacataagctcaaaataagtcaatccaaacgg 35643215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 38856134 - 38856091
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| || ||||||| |||||||||||||||||||||    
T  38856134 agtagataagcccatataagctcaaaataagccaatccaaacgg 38856091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 38933986 - 38933944
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| |||||||||| |||||||||||||||||||||    
T  38933986 agtagataagc-cacataagctcaaaataagccaatccaaacgg 38933944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 49128090 - 49128047
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| |||||||| |||||||||| ||||||||||||    
T  49128090 agtagataagcccacataagtttaaaataagtcaatccaaacgg 49128047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 86
Target Start/End: Original strand, 12117807 - 12117848
Alignment:
Q  45 tagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||| |||||||||| ||||||||||||| |||||||    
T  12117807 tagataagcccacataagctcaaaataagccaattcaaacgg 12117848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 21581083 - 21581042
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaac 84  Q
    ||||||||||| |||||||||| |||||||| ||||||||||    
T  21581083 agtagataagcccacataagctcaaaataagtcaatccaaac 21581042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 44609480 - 44609521
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaac 84  Q
    ||||||||||  |||||||||| |||||||||||||||||||    
T  44609480 agtagataagtccacataagctcaaaataagccaatccaaac 44609521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 54189599 - 54189546
Alignment:
Q  33 ggcttttgttagtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||| ||||||||||||||| |||||||||| |||||||||||||||||||||    
T  54189599 ggcttatgttagtagataagcccacataagctcaaaataagccaatccaaacgg 54189546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 23776608 - 23776662
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacggagccatagttt 97  Q
    ||||||||||| |||||||||| ||||||||||||||||||||| ||| ||||||    
T  23776608 agtagataagcccacataagctcaaaataagccaatccaaacggggccctagttt 23776662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 1617126 - 1617085
Alignment:
Q  45 tagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  1617126 tagataagctcacataagctcaaaataagccaatccaaacgg 1617085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 15669225 - 15669184
Alignment:
Q  45 tagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  15669225 tagataagctcacataagctcaaaataagccaatccaaacgg 15669184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 19913779 - 19913828
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacggagccat 92  Q
    ||||||||||| |||||||||| ||||||||||||||||||||| |||||    
T  19913779 agtagataagcccacataagctcaaaataagccaatccaaacggggccat 19913828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 44375887 - 44375846
Alignment:
Q  45 tagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  44375887 tagataagcccacataagcttaaaataagccaatccaaacgg 44375846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 16700825 - 16700781
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgga 87  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||    
T  16700825 agtagataagcccacataagctcaaaataagccaatccaaacgga 16700781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 30171621 - 30171581
Alignment:
Q  46 agataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  30171621 agataagctcacataagctcaaaataagccaatccaaacgg 30171581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 53875701 - 53875657
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgga 87  Q
    |||| |||||| |||||||||||||||||||||||||||||||||    
T  53875701 agtatataagcccacataagcttaaaataagccaatccaaacgga 53875657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 2481557 - 2481600
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| |||||||||| |||||||||||||||||||||    
T  2481557 agtagataagcccacataagctcaaaataagccaatccaaacgg 2481600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 19165121 - 19165164
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| |||||||||| |||||||||||||||||||||    
T  19165121 agtagataagcccacataagctcaaaataagccaatccaaacgg 19165164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 20877091 - 20877048
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| |||||||||| |||||||||||||||||||||    
T  20877091 agtagataagcccacataagctcaaaataagccaatccaaacgg 20877048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 23265906 - 23265949
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| |||||||||| |||||||||||||||||||||    
T  23265906 agtagataagcccacataagctcaaaataagccaatccaaacgg 23265949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 23704348 - 23704399
Alignment:
Q  33 ggcttttgttagtagataagctcacataagcttaaaataagccaatccaaac 84  Q
    ||||| ||| |||||||||||||| ||||||| |||||||||||||||||||    
T  23704348 ggcttatgtgagtagataagctcatataagctcaaaataagccaatccaaac 23704399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 44785066 - 44785109
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| |||||||||| |||||||||||||||||||||    
T  44785066 agtagataagcccacataagctcaaaataagccaatccaaacgg 44785109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 50055250 - 50055293
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| |||||||||| |||||||||||||||||||||    
T  50055250 agtagataagcccacataagctcaaaataagccaatccaaacgg 50055293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 50353845 - 50353802
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    |||||||||||||||| ||||| |||||||||||||||||||||    
T  50353845 agtagataagctcacagaagctcaaaataagccaatccaaacgg 50353802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 53717613 - 53717656
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||| |||||||||||| |||||||||||||||||||||    
T  53717613 agtagataaactcacataagctcaaaataagccaatccaaacgg 53717656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 54412672 - 54412629
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| |||||||||| |||||||||||||||||||||    
T  54412672 agtagataagcccacataagctcaaaataagccaatccaaacgg 54412629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 93
Target Start/End: Complemental strand, 38055201 - 38055151
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacggagccata 93  Q
    ||||||||||| |||||||||| |||||||| |||||||||||| ||||||    
T  38055201 agtagataagcccacataagctcaaaataagtcaatccaaacggggccata 38055151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 43290099 - 43290156
Alignment:
Q  33 ggcttttgttagtagataagctcacataagcttaaaataagccaatccaaacggagcc 90  Q
    ||||| ||| ||||||||||| || | ||||| |||||||||||||||||||||||||    
T  43290099 ggcttatgtgagtagataagcacataaaagctcaaaataagccaatccaaacggagcc 43290156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 14987836 - 14987784
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacggagccatagt 95  Q
    |||| |||||| |||||||||| ||||||||||||||||||||| ||| ||||    
T  14987836 agtatataagcccacataagctcaaaataagccaatccaaacggggccttagt 14987784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 1756913 - 1756956
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| || ||||||| |||||||||||||||||||||    
T  1756913 agtagataagcccatataagctcaaaataagccaatccaaacgg 1756956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 8932327 - 8932370
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| | |||||||| |||||||||||||||||||||    
T  8932327 agtagataagcccgcataagctcaaaataagccaatccaaacgg 8932370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 30423713 - 30423756
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| ||||||| || |||||||||||||||||||||    
T  30423713 agtagataagcccacataaactcaaaataagccaatccaaacgg 30423756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 85
Target Start/End: Original strand, 15241177 - 15241219
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacg 85  Q
    ||||||||| | |||||||||| ||||||||||||||||||||    
T  15241177 agtagataaacccacataagctcaaaataagccaatccaaacg 15241219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 37464763 - 37464722
Alignment:
Q  45 tagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||| |||||||||| ||||||||||||| |||||||    
T  37464763 tagataagcccacataagctcaaaataagccaattcaaacgg 37464722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 48909890 - 48909849
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaac 84  Q
    ||||||||| | |||||||||| |||||||||||||||||||    
T  48909890 agtagataaacccacataagctcaaaataagccaatccaaac 48909849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 45424683 - 45424735
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacggagccatagt 95  Q
    |||||||||||  ||||||||| |||||||| |||||||||||| ||| ||||    
T  45424683 agtagataagccaacataagctcaaaataagtcaatccaaacggggccttagt 45424735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 18683798 - 18683714
Alignment:
Q  1 attttgattatttacccaagagcatctgaaagggcttttgttagtagataagctcacataagcttaaaataagccaatccaaacg 85  Q
    ||||| |||||||||||||  | || |||||| |||| |||||||||||||||||  |||||||||||||||| || ||||||||    
T  18683798 atttttattatttacccaaacgtatttgaaagagcttatgttagtagataagctccaataagcttaaaataagtcagtccaaacg 18683714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 18729360 - 18729276
Alignment:
Q  1 attttgattatttacccaagagcatctgaaagggcttttgttagtagataagctcacataagcttaaaataagccaatccaaacg 85  Q
    ||||| |||||||||||||  | || |||||| |||| |||||||||||||||||  |||||||||||||||| || ||||||||    
T  18729360 atttttattatttacccaaacgtatttgaaagagcttatgttagtagataagctccaataagcttaaaataagtcagtccaaacg 18729276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 22260791 - 22260834
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  22260791 agtagataagctcacataagctcaaaataagccaatccaaacgg 22260834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 28639324 - 28639281
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    |||||||||||||||||||||||||||||||||||| |||||||    
T  28639324 agtagataagctcacataagcttaaaataagccaattcaaacgg 28639281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 5320610 - 5320562
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacggagcca 91  Q
    ||||||||| |||||||||||| ||||||||||||||||||||| ||||    
T  5320610 agtagataaactcacataagctcaaaataagccaatccaaacggggcca 5320562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 35118192 - 35118240
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacggagcca 91  Q
    ||||||||||| |||||||||| ||||||||||||||||||||| ||||    
T  35118192 agtagataagcccacataagctcaaaataagccaatccaaacggggcca 35118240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 13110450 - 13110407
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| |||||||||| |||||||||||||||||||||    
T  13110450 agtagataagcccacataagctcaaaataagccaatccaaacgg 13110407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 18594583 - 18594540
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| |||||||||| |||||||||||||||||||||    
T  18594583 agtagataagcccacataagctcaaaataagccaatccaaacgg 18594540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 34842526 - 34842569
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| |||||||||| |||||||||||||||||||||    
T  34842526 agtagataagcccacataagctcaaaataagccaatccaaacgg 34842569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 39206632 - 39206589
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| |||||||||| |||||||||||||||||||||    
T  39206632 agtagataagcccacataagctcaaaataagccaatccaaacgg 39206589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 39218823 - 39218780
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| |||||||||| |||||||||||||||||||||    
T  39218823 agtagataagcccacataagctcaaaataagccaatccaaacgg 39218780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Original strand, 2042685 - 2042727
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacg 85  Q
    ||||||||||| |||||||||| ||||||||||||||||||||    
T  2042685 agtagataagcccacataagctcaaaataagccaatccaaacg 2042727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Original strand, 10836916 - 10836958
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacg 85  Q
    ||||||||||| |||||||||| ||||||||||||||||||||    
T  10836916 agtagataagcccacataagctcaaaataagccaatccaaacg 10836958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 93
Target Start/End: Complemental strand, 14422749 - 14422699
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacggagccata 93  Q
    ||||||||||| |||||||||| ||||||| ||||||||||||| ||||||    
T  14422749 agtagataagcccacataagctcaaaataaaccaatccaaacggggccata 14422699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Original strand, 26783894 - 26783936
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacg 85  Q
    ||||||||||| |||||||||| ||||||||||||||||||||    
T  26783894 agtagataagcccacataagctcaaaataagccaatccaaacg 26783936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 5005212 - 5005171
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaac 84  Q
    ||||||||||| ||||||||||||| ||||||||||||||||    
T  5005212 agtagataagcccacataagcttaagataagccaatccaaac 5005171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 41575559 - 41575510
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacggagccat 92  Q
    ||||||||||   ||||||||| |||||||||||||||||||||||||||    
T  41575559 agtagataagtctacataagctcaaaataagccaatccaaacggagccat 41575510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 29938107 - 29938059
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacggagcca 91  Q
    |||| |||||| |||||||||| ||||||||||||||||||||| ||||    
T  29938107 agtatataagcccacataagctcaaaataagccaatccaaacggggcca 29938059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 7791457 - 7791414
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||| ||||||||| || |||||||||||||||||||||    
T  7791457 agtagataaactcacataaactcaaaataagccaatccaaacgg 7791414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 8021765 - 8021722
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| || ||||||| |||||||||||||||||||||    
T  8021765 agtagataagcccatataagctcaaaataagccaatccaaacgg 8021722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 24113327 - 24113370
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| |||||||||| |||||||| ||||||||||||    
T  24113327 agtagataagcccacataagctcaaaataagtcaatccaaacgg 24113370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 40118013 - 40118056
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||| | |||||||||| |||||||||||||||||||||    
T  40118013 agtagataaacccacataagctcaaaataagccaatccaaacgg 40118056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 83
Target Start/End: Complemental strand, 36491201 - 36491163
Alignment:
Q  45 tagataagctcacataagcttaaaataagccaatccaaa 83  Q
    ||||||| | |||||||||||||||||||||||||||||    
T  36491201 tagataatcccacataagcttaaaataagccaatccaaa 36491163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 85
Target Start/End: Complemental strand, 42571640 - 42571598
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacg 85  Q
    ||||||||| | |||||||||| ||||||||||||||||||||    
T  42571640 agtagataaacccacataagctcaaaataagccaatccaaacg 42571598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 144440 - 144387
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacggagccatagtt 96  Q
    ||||||||||  |||||| ||| |||||||| |||||||||||||| |||||||    
T  144440 agtagataagtccacatatgctcaaaataagtcaatccaaacggagtcatagtt 144387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 6144434 - 6144491
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacggagccatagtttaag 100  Q
    ||||||||||| || ||||||| |||||||| |||||||||||| ||| || ||||||    
T  6144434 agtagataagcccatataagctcaaaataagtcaatccaaacggggccttactttaag 6144491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 34679618 - 34679659
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaac 84  Q
    ||||||||||| || ||||||| |||||||||||||||||||    
T  34679618 agtagataagcccatataagctcaaaataagccaatccaaac 34679659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 52891 - 52839
Alignment:
Q  34 gcttttgttagtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    |||| ||||||||||||||| |||||||||| |||||||||||||||||||||    
T  52891 gcttatgttagtagataagcccacataagctcaaaataagccaatccaaacgg 52839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 33463747 - 33463704
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  33463747 agtagataagctcacataagctcaaaataagccaatccaaacgg 33463704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 20726837 - 20726785
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacggagccatagt 95  Q
    ||||||||||| || ||||||| ||||||||||||||||||||| ||||||||    
T  20726837 agtagataagcccatataagctcaaaataagccaatccaaacggggccatagt 20726785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 2837591 - 2837548
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| |||||||||| |||||||||||||||||||||    
T  2837591 agtagataagcccacataagctcaaaataagccaatccaaacgg 2837548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 3347684 - 3347727
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| |||||||||| |||||||||||||||||||||    
T  3347684 agtagataagcccacataagctcaaaataagccaatccaaacgg 3347727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 6086760 - 6086803
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| |||||||||| |||||||||||||||||||||    
T  6086760 agtagataagcccacataagctcaaaataagccaatccaaacgg 6086803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 17261234 - 17261277
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| |||||||||| |||||||||||||||||||||    
T  17261234 agtagataagcccacataagctcaaaataagccaatccaaacgg 17261277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Complemental strand, 30691897 - 30691855
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacg 85  Q
    ||||||||||| |||||||||| ||||||||||||||||||||    
T  30691897 agtagataagcccacataagctcaaaataagccaatccaaacg 30691855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 3955927 - 3955980
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacggagccatagtt 96  Q
    ||||||||| | |||||||||| ||||||||||||||||||||| | |||||||    
T  3955927 agtagataaacccacataagctcaaaataagccaatccaaacggggtcatagtt 3955980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 9459607 - 9459566
Alignment:
Q  45 tagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||||||||| || |||||||||||||||||||||    
T  9459607 tagataagctcacataaactcaaaataagccaatccaaacgg 9459566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 26947037 - 26947080
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| || ||||||| |||||||||||||||||||||    
T  26947037 agtagataagcccatataagctcaaaataagccaatccaaacgg 26947080  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 86
Target Start/End: Complemental strand, 11167281 - 11167243
Alignment:
Q  48 ataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    |||||| |||||||||| |||||||||||||||||||||    
T  11167281 ataagcacacataagctcaaaataagccaatccaaacgg 11167243  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 1153639 - 1153603
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatc 79  Q
    |||||||||||  ||||||||||||||||||||||||    
T  1153639 agtagataagccaacataagcttaaaataagccaatc 1153603  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 12835102 - 12835055
Alignment:
Q  34 gcttttgttagtagataagctcacataagcttaaaataagccaatccaa 82  Q
    |||| |||||||||||||| | |||||||||| ||||||||||||||||    
T  12835102 gcttatgttagtagataagtttacataagctt-aaataagccaatccaa 12835055  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 26704500 - 26704552
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacggagccatagt 95  Q
    ||||||||||| ||| |||||| ||||||| ||||||||||||| ||| ||||    
T  26704500 agtagataagcccacgtaagctcaaaataaaccaatccaaacggggccctagt 26704552  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 42937761 - 42937716
Alignment:
Q  45 tagataagctcacataagcttaaaataagccaatccaaacggagcc 90  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||    
T  42937761 tagataaactcacataagctcaaaataagccaatccaaacggagcc 42937716  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 30270840 - 30270892
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacggagccatagt 95  Q
    ||||||||| |||| ||||||||||||||||||||||||||||| ||| ||||    
T  30270840 agtagataaactcatataagcttaaaataagccaatccaaacggggccttagt 30270892  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 4016083 - 4016040
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||| |||||||||||| |||||||||||||||||||||    
T  4016083 agtagataaactcacataagctcaaaataagccaatccaaacgg 4016040  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 6174989 - 6175032
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    |||| ||||||||||||||||| |||||||||||||||||||||    
T  6174989 agtatataagctcacataagctcaaaataagccaatccaaacgg 6175032  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 41 - 84
Target Start/End: Original strand, 12517343 - 12517385
Alignment:
Q  41 ttagtagataagctcacataagcttaaaataagccaatccaaac 84  Q
    ||||||||||||||||||||||||| ||||||||||||||||||    
T  12517343 ttagtagataagctcacataagctt-aaataagccaatccaaac 12517385  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 18807045 - 18807088
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    |||||||||||||| ||||||| |||||||||||||||||||||    
T  18807045 agtagataagctcatataagctcaaaataagccaatccaaacgg 18807088  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 30420328 - 30420371
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| |||||||||| |||||||||||||||||||||    
T  30420328 agtagataagcccacataagctcaaaataagccaatccaaacgg 30420371  T

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Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Original strand, 3873405 - 3873447
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacg 85  Q
    ||||||||||| |||||||||| ||||||||||||||||||||    
T  3873405 agtagataagcccacataagctcaaaataagccaatccaaacg 3873447  T

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Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 93
Target Start/End: Original strand, 31517376 - 31517426
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacggagccata 93  Q
    ||||||||||| || ||||||| ||||||||||||||||||||| ||||||    
T  31517376 agtagataagcccaaataagctcaaaataagccaatccaaacggggccata 31517426  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 1483063 - 1483107
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgga 87  Q
    ||||||||||| |||||||||| |||||||||||||| |||||||    
T  1483063 agtagataagcccacataagctcaaaataagccaatcaaaacgga 1483107  T

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Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 851041 - 850998
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    |||||||||||  ||||||||||||||||||| |||||||||||    
T  851041 agtagataagcctacataagcttaaaataagcaaatccaaacgg 850998  T

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Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 4232303 - 4232346
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| |||||||||  |||||||||||||||||||||    
T  4232303 agtagataagcccacataagcacaaaataagccaatccaaacgg 4232346  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 90
Target Start/End: Original strand, 16588937 - 16588984
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacggagcc 90  Q
    ||||||||||| ||||||| |  |||||||||||||||||||||||||    
T  16588937 agtagataagcccacataaacacaaaataagccaatccaaacggagcc 16588984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 19901298 - 19901341
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    |||||| |||| |||||||||| |||||||||||||||||||||    
T  19901298 agtagagaagcccacataagctcaaaataagccaatccaaacgg 19901341  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 28329999 - 28330041
Alignment:
Q  44 gtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    |||||||||| |||||||||| |||||||| ||||||||||||    
T  28329999 gtagataagcccacataagctcaaaataagtcaatccaaacgg 28330041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 99
Target Start/End: Original strand, 26323347 - 26323403
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacggagccatagtttaa 99  Q
    ||||||||||  |||||||||| ||||||| ||||||||||||| ||| ||| ||||    
T  26323347 agtagataagtccacataagctcaaaataaaccaatccaaacggggccttagattaa 26323403  T

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Target: scaffold0012 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 36749 - 36706
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| |||||||||| |||||||||||||||||||||    
T  36749 agtagataagcccacataagctcaaaataagccaatccaaacgg 36706  T

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Target: scaffold0482 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 456 - 499
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||| ||||||||| || |||||||||||||||||||||    
T  456 agtagataaactcacataaactcaaaataagccaatccaaacgg 499  T

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Target: scaffold0167 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 23112 - 23155
Alignment:
Q  43 agtagataagctcacataagcttaaaataagccaatccaaacgg 86  Q
    ||||||||||| || ||||||| |||||||||||||||||||||    
T  23112 agtagataagcccatataagctcaaaataagccaatccaaacgg 23155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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