View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6540_high_17 (Length: 432)
Name: NF6540_high_17
Description: NF6540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6540_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 11 - 297
Target Start/End: Complemental strand, 38124471 - 38124185
Alignment:
| Q |
11 |
aatgagattaataagagtaaatgtgaataattatcttaacaagtttggaagtagttaattttgttaccggtgaagtctaaatttctttatgaaaatttaa |
110 |
Q |
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| T |
38124471 |
aatgagattaataagagtaaatgtgaataattatcttaacaagtttggaagtagttaattttgttaccggtgaagtctaaatttctttatgaaaatttaa |
38124372 |
T |
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| Q |
111 |
ggaactagatcatctcatgtgtgatcttcaaattataaagtaatgtataatttctaaccattcnnnnnnnnnnnnnnnnnntatatcatttcgatgtttt |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
38124371 |
ggaactagatcatctcatgtgtgatcttcaaattataaagtaatgtataatttctaaccattcaaaataaaaagaaaaaaaaatatcatttcgatgtttt |
38124272 |
T |
|
| Q |
211 |
atatgtttctctctcatttttaatagtgagacactcataaaaattacacctaagatctatttttggaaaagggaaatgttatgacac |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
38124271 |
atatgtttctctctcatttttaatagtgagacactcataaaaattacacctaagatctatttttggaaaaggaaaatgctatgacac |
38124185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 306 - 414
Target Start/End: Complemental strand, 38124160 - 38124052
Alignment:
| Q |
306 |
ctctaacatccactattttattggatgaaattcatgtgagtatcatatcttagaaatggaccttccataaaatggtgaaactctgattaatttcactcaa |
405 |
Q |
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| T |
38124160 |
ctctaacatccactattttattagatgaaatttatgtgagtatcatatcttaaaaatggactttccataaaatggtgaaactctgattaatttcactcaa |
38124061 |
T |
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| Q |
406 |
tggtagagt |
414 |
Q |
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| T |
38124060 |
tagtagagt |
38124052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 383
Target Start/End: Original strand, 13639434 - 13639511
Alignment:
| Q |
306 |
ctctaacatccactattttattggatgaaattcatgtgagtatcatatcttagaaatggaccttccataaaatggtga |
383 |
Q |
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| T |
13639434 |
ctctaacagtcactcttttattggatgaaattcatgtgggtatcacacattggaaatggatctcacataaagtggtga |
13639511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 383
Target Start/End: Original strand, 25695926 - 25695988
Alignment:
| Q |
321 |
ttttattggatgaaattcatgtgagtatcatatcttagaaatggaccttccataaaatggtga |
383 |
Q |
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| T |
25695926 |
ttttattgtatgaaattcatgcgaataccacatattagaaatggacctcacataaaatggtga |
25695988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 363
Target Start/End: Complemental strand, 21776648 - 21776606
Alignment:
| Q |
321 |
ttttattggatgaaattcatgtgagtatcatatcttagaaatg |
363 |
Q |
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| T |
21776648 |
ttttattggatgaaatacatgtgagtatcacatattagaaatg |
21776606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 383
Target Start/End: Complemental strand, 31699611 - 31699551
Alignment:
| Q |
323 |
ttattggatgaaattcatgtgagtatcatatcttagaaatggaccttccataaaatggtga |
383 |
Q |
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||||||| ||||||||||||| |||||||| || |||||||||| ||||||||||||| |
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| T |
31699611 |
ttattgggtgaaattcatgtgggtatcatacattggaaatggaccccacataaaatggtga |
31699551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 350
Target Start/End: Original strand, 48129792 - 48129820
Alignment:
| Q |
322 |
tttattggatgaaattcatgtgagtatca |
350 |
Q |
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| T |
48129792 |
tttattggatgaaattcatgtgagtatca |
48129820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 351
Target Start/End: Original strand, 1249011 - 1249055
Alignment:
| Q |
307 |
tctaacatccactattttattggatgaaattcatgtgagtatcat |
351 |
Q |
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||||||| ||||||||||||||||||||| ||||||||| |||| |
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| T |
1249011 |
tctaacactcactattttattggatgaaatccatgtgagtctcat |
1249055 |
T |
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