View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6540_high_20 (Length: 406)
Name: NF6540_high_20
Description: NF6540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6540_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 224
Target Start/End: Original strand, 39940994 - 39941202
Alignment:
| Q |
16 |
atccatacactgaacttgaggaagttagctccgattttgttttagcaattggcttgcaagaacaagagttagagagaacaacagtcacaaacctagcaac |
115 |
Q |
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| T |
39940994 |
atccatacactgaacttgaggaagttagctctgattttgttctagcaattggcttgcaagaacaagagttagagagaacaacattcacaaacctagcaac |
39941093 |
T |
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| Q |
116 |
cattgaaagtgaaagtgacgaagatataagtgactcctcttttagtaatgatgatattggtgatgctgatttttcatttagtcaggagttcgaaaccgat |
215 |
Q |
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| T |
39941094 |
cattgaaagtgaaagtgacgaagatataagtgactcctcttttagtaatgatgatattggtgatgctgatttttcatttagtcaggagttcgaaaccgat |
39941193 |
T |
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| Q |
216 |
cttcagttt |
224 |
Q |
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||||||||| |
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| T |
39941194 |
cttcagttt |
39941202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 282 - 388
Target Start/End: Original strand, 39941260 - 39941366
Alignment:
| Q |
282 |
gagttggaagaagatgaggttgatccagatgaattatcctatgaagagttgattgaattaggaaacttcataggagaagagaagaggggattaccagcta |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39941260 |
gagttggaagaagatgaggttgatccagatgaattatcctatgaagagttgattgaattaggaaacttcataggagaagagaagaggggattaccagcta |
39941359 |
T |
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| Q |
382 |
atgaaat |
388 |
Q |
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| T |
39941360 |
atgaaat |
39941366 |
T |
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