View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6540_high_23 (Length: 378)
Name: NF6540_high_23
Description: NF6540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6540_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 147 - 360
Target Start/End: Original strand, 31835611 - 31835824
Alignment:
| Q |
147 |
cattattcaccctcc-attttaaaaacctttctagacttgttggtagataattttcgatcgccactaaatttacacacaaacttaacatacacagtgtcc |
245 |
Q |
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| T |
31835611 |
cattattcaccctcccattttaaaaacctttctagacttgttggtagataattttcgatcgccactaaatttacacacaaacttaacat--acagtgtcc |
31835708 |
T |
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| Q |
246 |
tcactttggaatgagtatatatgacaaaggggtctctaacttggaagataaaggggt-agaagttttgaagactaaagtctgtaatctattttaatcatt |
344 |
Q |
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||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
31835709 |
tcactttggtatgagtatatatgacaaagtggtctctaacttggaagataaaggggtgtctagatttgaagactaaagtctgtaatctattttaatcatt |
31835808 |
T |
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| Q |
345 |
aaaagaaaattaaaaa |
360 |
Q |
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|||||||||||||||| |
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| T |
31835809 |
aaaagaaaattaaaaa |
31835824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 31835465 - 31835543
Alignment:
| Q |
1 |
gaagaagtactaaaaagagatttgaccatactccaataagtgaagtaatttacaaaatctaaatacctaagcaatactt |
79 |
Q |
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|||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
31835465 |
gaagaagtactaaaaagaaatatgaccatactccaataagcgaagtaatttacaaaatctaaatacctaagcaatactt |
31835543 |
T |
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