View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6540_high_24 (Length: 368)

Name: NF6540_high_24
Description: NF6540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6540_high_24
NF6540_high_24
[»] chr1 (13 HSPs)
chr1 (1-229)||(9171318-9171546)
chr1 (1-229)||(9179300-9179528)
chr1 (14-162)||(9156777-9156925)
chr1 (14-155)||(9219560-9219701)
chr1 (291-368)||(9171179-9171256)
chr1 (291-368)||(9179161-9179238)
chr1 (14-153)||(9162597-9162736)
chr1 (14-162)||(9201075-9201223)
chr1 (292-368)||(9200746-9200822)
chr1 (315-368)||(9162353-9162406)
chr1 (315-368)||(9118046-9118099)
chr1 (14-156)||(9117661-9117803)
chr1 (186-226)||(9200902-9200942)


Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 9171546 - 9171318
Alignment:
Q  1 gtaagtcaccaactaacacatgcataaatgaagatcattgtcgcaacaaggatgggttctatgaatgtttctgtcctgatggacaatctggaaatggaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9171546 gtaagtcaccaactaacacatgcataaatgaagatcattgtcgcaacaaggatgggttctatgaatgtttctgtcctgatggacaatctggaaatggaac 9171447  T
Q  101 aaaggaaggacggtgtcatagacgagatgttattaccaaggttgccattggtaagcacctaacataaccctaatttatttctagataagatcaaattgat 200  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9171446 aaaggaaggagggtgtcatagacgagatgttattaccaaggttgccattggtaagcacctaacataaccctaatttatttctagataagatcaaattgat 9171347  T
Q  201 gaagaatacttgagttcgatcatccatac 229  Q
    |||||||||||||||||||||||||||||    
T  9171346 gaagaatacttgagttcgatcatccatac 9171318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 9179528 - 9179300
Alignment:
Q  1 gtaagtcaccaactaacacatgcataaatgaagatcattgtcgcaacaaggatgggttctatgaatgtttctgtcctgatggacaatctggaaatggaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9179528 gtaagtcaccaactaacacatgcataaatgaagatcattgtcgcaacaaggatgggttctatgaatgtttctgtcctgatggacaatctggaaatggaac 9179429  T
Q  101 aaaggaaggacggtgtcatagacgagatgttattaccaaggttgccattggtaagcacctaacataaccctaatttatttctagataagatcaaattgat 200  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9179428 aaaggaaggagggtgtcatagacgagatgttattaccaaggttgccattggtaagcacctaacataaccctaatttatttctagataagatcaaattgat 9179329  T
Q  201 gaagaatacttgagttcgatcatccatac 229  Q
    |||||||||||||||||||||||||||||    
T  9179328 gaagaatacttgagttcgatcatccatac 9179300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 14 - 162
Target Start/End: Complemental strand, 9156925 - 9156777
Alignment:
Q  14 taacacatgcataaatgaagatcattgtcgcaacaaggatgggttctatgaatgtttctgtcctgatggacaatctggaaatggaacaaaggaaggacgg 113  Q
    ||||||||||||||||||||||||||||||||| |  ||||| |   ||||||||||||||||||||||||| |||||||||||||||  ||||||| ||    
T  9156925 taacacatgcataaatgaagatcattgtcgcaatactgatggatctcatgaatgtttctgtcctgatggacactctggaaatggaacattggaaggaggg 9156826  T
Q  114 tgtcatagacgagatgttattaccaaggttgccattggtaagcacctaa 162  Q
    |||||||||||||| || || ||||||||||||||||||||||||||||    
T  9156825 tgtcatagacgagaggtcatcaccaaggttgccattggtaagcacctaa 9156777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 14 - 155
Target Start/End: Complemental strand, 9219701 - 9219560
Alignment:
Q  14 taacacatgcataaatgaagatcattgtcgcaacaaggatgggttctatgaatgtttctgtcctgatggacaatctggaaatggaacaaaggaaggacgg 113  Q
    |||||||||||||| ||||  |||||||||||||| ||||||||| || |||||||| |||||| |||||||||||||||||||||||  ||||||| |     
T  9219701 taacacatgcataagtgaaagtcattgtcgcaacacggatgggttttacgaatgtttttgtcctaatggacaatctggaaatggaacattggaaggaggt 9219602  T
Q  114 tgtcatagacgagatgttattaccaaggttgccattggtaag 155  Q
    ||||||||||||||| || |||||||||||||||||||||||    
T  9219601 tgtcatagacgagatattgttaccaaggttgccattggtaag 9219560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 291 - 368
Target Start/End: Complemental strand, 9171256 - 9171179
Alignment:
Q  291 ctcatgaatcaatcaatttcaactcatttcaaacgcaggagcaagtgctggaatcattattctatttgtggtgatttc 368  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9171256 ctcatgaatcaatcaatttcaactcatttcaaacgcaggagcaagtgctggaatcattattctatttgtggtgatttc 9171179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 291 - 368
Target Start/End: Complemental strand, 9179238 - 9179161
Alignment:
Q  291 ctcatgaatcaatcaatttcaactcatttcaaacgcaggagcaagtgctggaatcattattctatttgtggtgatttc 368  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9179238 ctcatgaatcaatcaatttcaactcatttcaaacgcaggagcaagtgctggaatcattattctatttgtggtgatttc 9179161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 14 - 153
Target Start/End: Complemental strand, 9162736 - 9162597
Alignment:
Q  14 taacacatgcataaatgaagatcattgtcgcaacaaggatgggttctatgaatgtttctgtcctgatggacaatctggaaatggaacaaaggaaggacgg 113  Q
    ||||||||| ||| |||||  ||| |||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||   |||||| |     
T  9162736 taacacatgtatagatgaaagtcactgtcgcaacacggatggattatatgaatgtttctgtcctgatggacaatctggaaatggaacacttgaaggaggt 9162637  T
Q  114 tgtcatagacgagatgttattaccaaggttgccattggta 153  Q
    ||||||||||||||| || ||| |||||||||||||||||    
T  9162636 tgtcatagacgagatattgttatcaaggttgccattggta 9162597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 14 - 162
Target Start/End: Complemental strand, 9201223 - 9201075
Alignment:
Q  14 taacacatgcataaatgaagatcattgtcgcaacaaggatgggttctatgaatgtttctgtcctgatggacaatctggaaatggaacaaaggaaggacgg 113  Q
    |||||||||||||| |||| | ||||||||||| |  ||||| |   |||||||||| |||||||||||||||||||||||||||||   || |||| |     
T  9201223 taacacatgcataagtgaaaaacattgtcgcaatactgatggatctcatgaatgtttttgtcctgatggacaatctggaaatggaacgttggcaggaggt 9201124  T
Q  114 tgtcatagacgagatgttattaccaaggttgccattggtaagcacctaa 162  Q
    ||||||| || ||||||||||||||||||||| ||||||||| ||||||    
T  9201123 tgtcataaacaagatgttattaccaaggttgcaattggtaagaacctaa 9201075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 292 - 368
Target Start/End: Complemental strand, 9200822 - 9200746
Alignment:
Q  292 tcatgaatcaatcaatttcaactcatttcaaacgcaggagcaagtgctggaatcattattctatttgtggtgatttc 368  Q
    |||||||||||||||||||||| ||||||| | |||||||||||||||||||||||| |||||||||| | ||||||    
T  9200822 tcatgaatcaatcaatttcaacgcatttcatatgcaggagcaagtgctggaatcattgttctatttgtcgcgatttc 9200746  T

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Target: chr1; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 315 - 368
Target Start/End: Complemental strand, 9162406 - 9162353
Alignment:
Q  315 catttcaaacgcaggagcaagtgctggaatcattattctatttgtggtgatttc 368  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  9162406 catttcaaatgcaggagcaagtgctggaatcattattctatttgtggcgatttc 9162353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 315 - 368
Target Start/End: Original strand, 9118046 - 9118099
Alignment:
Q  315 catttcaaacgcaggagcaagtgctggaatcattattctatttgtggtgatttc 368  Q
    ||||||||| |||||| |||||||||||||| ||||||||||||||| ||||||    
T  9118046 catttcaaatgcaggatcaagtgctggaatcgttattctatttgtggggatttc 9118099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 156
Target Start/End: Original strand, 9117661 - 9117803
Alignment:
Q  14 taacacatgcataaatgaagatcattgtcgcaacaaggatgggttctatgaatgtttctgtcctgatggacaatctggaaatggaacaaaggaaggacgg 113  Q
    ||||||||||||| || ||||||| |||| |||||  ||||| |  ||  |||| || |||||  | || ||||| || |||||||||| ||||||| ||    
T  9117661 taacacatgcatatataaagatcactgtcacaacattgatggatcttacaaatgcttttgtccgaaggggcaatccggcaatggaacaagggaaggaggg 9117760  T
Q  114 tgtcatagacgagatgttattaccaaggttgccattggtaagc 156  Q
    ||||||| || ||||||  ||| |||||||| |||||||||||    
T  9117761 tgtcatacacaagatgtagttatcaaggttgtcattggtaagc 9117803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 9200942 - 9200902
Alignment:
Q  186 taagatcaaattgatgaagaatacttgagttcgatcatcca 226  Q
    |||||||||||||||  ||||||||||||||||||||||||    
T  9200942 taagatcaaattgatctagaatacttgagttcgatcatcca 9200902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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