View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6540_high_29 (Length: 335)
Name: NF6540_high_29
Description: NF6540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6540_high_29 |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 19 - 323
Target Start/End: Complemental strand, 32505294 - 32504993
Alignment:
| Q |
19 |
taagcagaactcatacgtaccacccttcaaatgtcatctgccccacccaattgtcaaaccattcacattgttcttgatcttagcacaattaaagtaattc |
118 |
Q |
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| T |
32505294 |
taagcagaactcatacgtaccacccttcaaatgtcatctgccccacccaattgtcaaaccattcacattgttcttgatcttagcacaattaaagtaattc |
32505195 |
T |
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| Q |
119 |
agctatgaaattttttaaccattgaggaatcatgcatgataaagggaagggtaatagcaatttaatgagatgagctgtatgataagctagttctgtgatt |
218 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32505194 |
agctttgaaattttttaaccattgaggaatcatgcatgataaagagaagggtaatagcaatttaatgagatgagctgtatgataagctagttctgtgatt |
32505095 |
T |
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| Q |
219 |
ttctaattaagtgctattgttatgcatggttttgagctctgcttgtatttgattatttgaacccaccctacaacatcacactttaatgtgatagtacccg |
318 |
Q |
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||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32505094 |
ttctaattaagtgctattgttatgcatggttttgatct---cttgtatttgattatttgaacccaccctacaacatcacactttaatgtgatagtacccg |
32504998 |
T |
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| Q |
319 |
atttt |
323 |
Q |
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||||| |
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| T |
32504997 |
atttt |
32504993 |
T |
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