View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6540_high_3 (Length: 585)

Name: NF6540_high_3
Description: NF6540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6540_high_3
NF6540_high_3
[»] chr7 (20 HSPs)
chr7 (108-376)||(39661375-39661643)
chr7 (310-576)||(39661006-39661273)
chr7 (15-203)||(39661593-39661781)
chr7 (252-384)||(39656857-39656989)
chr7 (305-399)||(39656563-39656657)
chr7 (305-405)||(39656590-39656690)
chr7 (328-405)||(39656755-39656832)
chr7 (20-121)||(39657090-39657191)
chr7 (305-397)||(39656730-39656822)
chr7 (310-405)||(39656623-39656718)
chr7 (341-405)||(39656869-39656933)
chr7 (310-376)||(39661291-39661357)
chr7 (108-236)||(39656951-39657079)
chr7 (305-405)||(39656689-39656789)
chr7 (305-372)||(39661178-39661245)
chr7 (343-405)||(39661295-39661357)
chr7 (284-321)||(39651613-39651650)
chr7 (341-405)||(39661379-39661443)
chr7 (85-146)||(39661461-39661522)
chr7 (226-262)||(39656952-39656988)


Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-128; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 108 - 376
Target Start/End: Complemental strand, 39661643 - 39661375
Alignment:
Q  108 gcccctgcatttgccatgaaaaacaatgcctctgcatttgctaacgcccctgcgtttgccatgcaaaataatggctctgcatttgctaacacccctccat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39661643 gcccctgcatttgccatgaaaaacaatgcctctgcatttgctaacgcccctgcgtttgccatgcaaaataatggctctgcatttgctaacacccctccat 39661544  T
Q  208 taactatgcaaaattattcccctgcatttgccatgcaatataatgcccctgcattcaccatgcaaaataatgctcctacatttaactcattgctcacaca 307  Q
    |  |||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||| ||||||| ||| ||||||||||||||||||||||    
T  39661543 tcgctatgcaaaattattcccctgcattttccatgcaatataatgcccctgcatttgccatgcaatataatgcccctgcatttaactcattgctcacaca 39661444  T
Q  308 accaaactatagtcctgcatttgcagctcaactaccaaactatagcccggcgtttgcagctcaacaagc 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  39661443 accaaactatagtcctgcatttgcagctcaactaccaaactatagcccggcgtttgcagcccaacaagc 39661375  T

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Target: chr7; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 310 - 576
Target Start/End: Complemental strand, 39661273 - 39661006
Alignment:
Q  310 caaactatagtcctgcatttgcagctcaactaccaaactatagcccggcgtttgcagctcaacaagcaaactatagcccggcatttgcagctcaactacg 409  Q
    ||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39661273 caaactatagtcctgcatttgcagcccaacaagcaaactatagcccggcgtttgcagctcaacaagcaaactatagcccggcatttgcagctcaactacg 39661174  T
Q  410 ttacaatgcaaagaagtccaagactccatctactagaagcagtaaaatccggggtaacgcaaagaagtctagggctccatctactagaagtactaatact 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  39661173 ttacaatgcaaagaagtccaagactccatctactagaagcagtaaaatccggggtaacgcagagaagtctagggctccatctactagaagtagtaatact 39661074  T
Q  510 cggggtaatgcaaaagaagtctaggact--ccatctactagaaggagtaacctctgatttgatgatgtc 576  Q
    ||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  39661073 cggggtaatgc-aaagaagtctaggactccccatctactagaaggagtaacctctgatttgatgatgtc 39661006  T

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Target: chr7; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 15 - 203
Target Start/End: Complemental strand, 39661781 - 39661593
Alignment:
Q  15 tcagatgtgtcgcgcctgctttcaaaaactctcacacatcaaaatcagaccttaatgaagaatttagctactgcatttgccacacaaaataatgcccctg 114  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  39661781 tcagatgtgtcgcgcctgctttcaaaaactctcgcacatcaaaatcagaccttaatgaagaatttagccactgcatttgccacacaaaataatgcccctg 39661682  T
Q  115 catttgccatgaaaaacaatgcctctgcatttgctaacgcccctgcgtttgccatgcaaaataatggctctgcatttgctaacacccct 203  Q
    |||||||||||||||| ||| ||||||||||||| ||||||||||| ||||||||| |||| |||| |||||||||||||||| |||||    
T  39661681 catttgccatgaaaaataatacctctgcatttgcgaacgcccctgcatttgccatgaaaaacaatgcctctgcatttgctaacgcccct 39661593  T

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Target: chr7; HSP #4
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 252 - 384
Target Start/End: Complemental strand, 39656989 - 39656857
Alignment:
Q  252 gcccctgcattcaccatgcaaaataatgctcctacatttaactcattgctcacacaaccaaactatagtcctgcatttgcagctcaactaccaaactata 351  Q
    |||||||||||  ||||| |||||||||| ||| ||||||| || |||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  39656989 gcccctgcatttgccatgaaaaataatgcccctgcatttaaatccttgctcacacaaccaaactatagtccggcgtttgcagctcaactaccaaactata 39656890  T
Q  352 gcccggcgtttgcagctcaacaagcaaactata 384  Q
    ||||||| |||||||||||||||||||||||||    
T  39656889 gcccggcatttgcagctcaacaagcaaactata 39656857  T

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Target: chr7; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 305 - 399
Target Start/End: Complemental strand, 39656657 - 39656563
Alignment:
Q  305 acaaccaaactatagtcctgcatttgcagctcaactaccaaactatagcccggcgtttgcagctcaacaagcaaactatagcccggcatttgcag 399  Q
    |||| ||||||||||||| || ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  39656657 acaagcaaactatagtccggcgtttgcagctcaacaagcaaactatagcccggcgtttgcagctcaacaagcaaactatagcctgacatttgcag 39656563  T

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Target: chr7; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 305 - 405
Target Start/End: Complemental strand, 39656690 - 39656590
Alignment:
Q  305 acaaccaaactatagtcctgcatttgcagctcaactaccaaactatagcccggcgtttgcagctcaacaagcaaactatagcccggcatttgcagctcaa 404  Q
    |||| ||||||||||||| || ||||||||  ||| | |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  39656690 acaagcaaactatagtccggcgtttgcagcctaacaagcaaactatagtccggcgtttgcagctcaacaagcaaactatagcccggcgtttgcagctcaa 39656591  T
Q  405 c 405  Q
    |    
T  39656590 c 39656590  T

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Target: chr7; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 328 - 405
Target Start/End: Complemental strand, 39656832 - 39656755
Alignment:
Q  328 ttgcagctcaactaccaaactatagcccggcgtttgcagctcaacaagcaaactatagcccggcatttgcagctcaac 405  Q
    |||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  39656832 ttgcagctcaacaagcaaactatagcccggcatttgcagctcaacaagcaaactatagcccggcatttgcagcccaac 39656755  T

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Target: chr7; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 39657191 - 39657090
Alignment:
Q  20 tgtgtcgcgcctgctttcaaaaactctcacacatcaaaatcagaccttaatgaagaatttagctactgcatttgccacacaaaataatgcccctgcattt 119  Q
    ||||||| |||||||||||||||||  |||| ||||||||||| |||| |||||||||||||| ||||||||||||| ||||||||||||| ||| ||||    
T  39657191 tgtgtcgggcctgctttcaaaaactggcacatatcaaaatcaggcctttatgaagaatttagccactgcatttgccaaacaaaataatgcctctggattt 39657092  T
Q  120 gc 121  Q
    ||    
T  39657091 gc 39657090  T

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Target: chr7; HSP #9
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 305 - 397
Target Start/End: Complemental strand, 39656822 - 39656730
Alignment:
Q  305 acaaccaaactatagtcctgcatttgcagctcaactaccaaactatagcccggcgtttgcagctcaacaagcaaactatagcccggcatttgc 397  Q
    |||| |||||||||| || |||||||||||||||| | |||||||||||||||| |||||||| |||||| ||||||||||||||||||||||    
T  39656822 acaagcaaactatagcccggcatttgcagctcaacaagcaaactatagcccggcatttgcagcccaacaaacaaactatagcccggcatttgc 39656730  T

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Target: chr7; HSP #10
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 310 - 405
Target Start/End: Complemental strand, 39656718 - 39656623
Alignment:
Q  310 caaactatagtcctgcatttgcagctcaactaccaaactatagcccggcgtttgcagctcaacaagcaaactatagcccggcatttgcagctcaac 405  Q
    ||||||||||||| || |||||||| |||| | |||||||||| ||||||||||||||  |||||||||||||||| ||||| |||||||||||||    
T  39656718 caaactatagtccggcgtttgcagcccaacaagcaaactatagtccggcgtttgcagcctaacaagcaaactatagtccggcgtttgcagctcaac 39656623  T

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Target: chr7; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 341 - 405
Target Start/End: Complemental strand, 39656933 - 39656869
Alignment:
Q  341 accaaactatagcccggcgtttgcagctcaacaagcaaactatagcccggcatttgcagctcaac 405  Q
    |||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  39656933 accaaactatagtccggcgtttgcagctcaactaccaaactatagcccggcatttgcagctcaac 39656869  T

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Target: chr7; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 310 - 376
Target Start/End: Complemental strand, 39661357 - 39661291
Alignment:
Q  310 caaactatagtcctgcatttgcagctcaactaccaaactatagcccggcgtttgcagctcaacaagc 376  Q
    ||||||||||||||||||||||||| |||| | ||||||||||||| ||||||||||||||||||||    
T  39661357 caaactatagtcctgcatttgcagcccaacaagcaaactatagcccagcgtttgcagctcaacaagc 39661291  T

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Target: chr7; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 108 - 236
Target Start/End: Complemental strand, 39657079 - 39656951
Alignment:
Q  108 gcccctgcatttgccatgaaaaacaatgcctctgcatttgctaacgcccctgcgtttgccatgcaaaataatggctctgcatttgctaacacccctccat 207  Q
    |||||||||| |||||||||||| ||||||||| |||||||||| |||||| | ||| ||||| | ||||||| |||||| ||||||| | ||||| |||    
T  39657079 gcccctgcatctgccatgaaaaataatgcctctacatttgctaaagccccttcattttccatgaataataatgcctctgcgtttgctagcgcccctgcat 39656980  T
Q  208 taactatgcaaaattattcccctgcattt 236  Q
    |  | ||| ||||| || |||||||||||    
T  39656979 ttgccatgaaaaataatgcccctgcattt 39656951  T

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Target: chr7; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 305 - 405
Target Start/End: Complemental strand, 39656789 - 39656689
Alignment:
Q  305 acaaccaaactatagtcctgcatttgcagctcaactaccaaactatagcccggcgtttgcagctcaacaagcaaactatagcccggcatttgcagctcaa 404  Q
    |||| |||||||||| || ||||||||||| |||| | |||||||||||||||| ||||| || ||  ||||||||||||| ||||| |||||||| |||    
T  39656789 acaagcaaactatagcccggcatttgcagcccaacaaacaaactatagcccggcatttgctgcccagaaagcaaactatagtccggcgtttgcagcccaa 39656690  T
Q  405 c 405  Q
    |    
T  39656689 c 39656689  T

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Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 372
Target Start/End: Complemental strand, 39661245 - 39661178
Alignment:
Q  305 acaaccaaactatagtcctgcatttgcagctcaactaccaaactatagcccggcgtttgcagctcaac 372  Q
    |||| |||||||||| || || ||||||||||||| | |||||||||||||||| |||||||||||||    
T  39661245 acaagcaaactatagcccggcgtttgcagctcaacaagcaaactatagcccggcatttgcagctcaac 39661178  T

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Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 343 - 405
Target Start/End: Complemental strand, 39661357 - 39661295
Alignment:
Q  343 caaactatagcccggcgtttgcagctcaacaagcaaactatagcccggcatttgcagctcaac 405  Q
    |||||||||| || || |||||||| |||||||||||||||||||| || |||||||||||||    
T  39661357 caaactatagtcctgcatttgcagcccaacaagcaaactatagcccagcgtttgcagctcaac 39661295  T

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Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 284 - 321
Target Start/End: Complemental strand, 39651650 - 39651613
Alignment:
Q  284 tacatttaactcattgctcacacaaccaaactatagtc 321  Q
    ||||||||||||||||||||||||||||||||||||||    
T  39651650 tacatttaactcattgctcacacaaccaaactatagtc 39651613  T

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Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 405
Target Start/End: Complemental strand, 39661443 - 39661379
Alignment:
Q  341 accaaactatagcccggcgtttgcagctcaacaagcaaactatagcccggcatttgcagctcaac 405  Q
    |||||||||||| || || ||||||||||||| | |||||||||||||||| |||||||| ||||    
T  39661443 accaaactatagtcctgcatttgcagctcaactaccaaactatagcccggcgtttgcagcccaac 39661379  T

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Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 146
Target Start/End: Complemental strand, 39661522 - 39661461
Alignment:
Q  85 ctgcatttgccacacaaaataatgcccctgcatttgccatgaaaaacaatgcctctgcattt 146  Q
    |||||||| |||  ||| ||||||||||||||||||||||| || | |||||| ||||||||    
T  39661522 ctgcattttccatgcaatataatgcccctgcatttgccatgcaatataatgcccctgcattt 39661461  T

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Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 226 - 262
Target Start/End: Complemental strand, 39656988 - 39656952
Alignment:
Q  226 cccctgcatttgccatgcaatataatgcccctgcatt 262  Q
    ||||||||||||||||| || ||||||||||||||||    
T  39656988 cccctgcatttgccatgaaaaataatgcccctgcatt 39656952  T

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