View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6540_high_32 (Length: 313)

Name: NF6540_high_32
Description: NF6540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6540_high_32
NF6540_high_32
[»] chr1 (1 HSPs)
chr1 (10-297)||(4252737-4253031)


Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 10 - 297
Target Start/End: Original strand, 4252737 - 4253031
Alignment:
Q  10 acatcatcagatgatgagctttcgccatttcccttttccttttgagtatc-------aagacccttatcggcttttgcctcttcccttctttgtcggagt 102  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||| ||||||||    
T  4252737 acatcctcagatgatgagctttcaccatttcccttttccttttgagtatcaactatcaagacccttatcggcttttgcctcttcccttcttcgtcggagt 4252836  T
Q  103 ccacatgcgttacacaaccactgcaccaacatatttcttgttaactatataatatatctaataactagatattcaaattattaataaatgacacatttgc 202  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  4252837 ctacatgcgttacacaaccactgcaccaacatatttcttgttaactatataatatatttaataactagatattcaaattattaataaatgccacatttgc 4252936  T
Q  203 atgaaccaaaagtgaaagttgatagtaaaataaagagatgaactaattaccttggaacccgtaggatcactactccaaagaggagtagtgtttgt 297  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4252937 atgaaccaaaagtgaaagttgatagaaaaataaagagatgaactaattaccttggaacccgtaggatcactactccaaagaggagtagtgtttgt 4253031  T

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