View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6540_high_33 (Length: 312)
Name: NF6540_high_33
Description: NF6540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6540_high_33 |
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Alignment Details
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 154
Target Start/End: Complemental strand, 6607965 - 6607828
Alignment:
| Q |
17 |
atgatacagattactaagggaattcaataaaaagattacacttgtttaattcctgtaaatggtgagcatatggtgaagatagaaagatcgttctcaaaat |
116 |
Q |
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| T |
6607965 |
atgatacagattaataagggaattcaataaaaagattacacttgtttaattcctgtaaatggtgagcatatcgtgaagatagaaagatcgttctcaaaat |
6607866 |
T |
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| Q |
117 |
cgcgattttatcataaagaggaagtagaaggtgtctct |
154 |
Q |
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| T |
6607865 |
cgcgattttatcataaagaggaagtagaaggtgtctct |
6607828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 6607753 - 6607713
Alignment:
| Q |
229 |
tgagcccgaaaaagaatctcgggtgagccactaaaattaat |
269 |
Q |
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| T |
6607753 |
tgagcccgaaaaagaatctcgggtgagccactaaaattaat |
6607713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 294
Target Start/End: Complemental strand, 6607656 - 6607626
Alignment:
| Q |
264 |
attaatcatcaactttgaaatttgcatagtt |
294 |
Q |
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| T |
6607656 |
attaatcatcaactttgaaatttgcatagtt |
6607626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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