View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6540_high_34 (Length: 312)
Name: NF6540_high_34
Description: NF6540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6540_high_34 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 6 - 296
Target Start/End: Complemental strand, 40207388 - 40207098
Alignment:
| Q |
6 |
cagagatgtactagtttagagtggttaattaataatgatttactacgaggcagaaacatgtaagaacgtttaattcatgcaaaagctcnnnnnnngtcaa |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
40207388 |
cagagatgtactagtttagagtggttaattaataatgatttactacgaggcagaaacatgtaagaacgtttaattcatgcaaaagctcaaaaaaagtcaa |
40207289 |
T |
|
| Q |
106 |
caaaaactaatttaactataagagttaggaagtacaggcaaaaacagtgatgttggaagtcaaagagaggaaaggatgagacacaaagaaggtgtttgtt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40207288 |
caaaaactaatttaactataagagttaggaagtacaggcaaaaacagtgatgttggaagtcaaagagaggaaaggatgagacacaaagaaggtgtttgtt |
40207189 |
T |
|
| Q |
206 |
gtgtgtatgtgctgcccttttgggcactcttgcttataacaatattagatgatttgaataaacgtgtgtctagtttatgcaatgaaggaag |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
40207188 |
gtgtgtatgtgctgcccttttgggcactcttgcttataacaatattagatgatttgaataaacgtgtgtctagtttatgtaatgaaggaag |
40207098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 101 - 296
Target Start/End: Complemental strand, 40203139 - 40202942
Alignment:
| Q |
101 |
gtcaacaaaaactaatttaactataagagttaggaagtacaggcaaaaacagtgatgttggaagtcaaagagaggaaaggatgagacacaaagaaggtgt |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
40203139 |
gtcaacaaaaactgatttaactataagagttagaaagtacaggcaaaaacagtgatgttggatgtcaaagagaggaaaggaagagacacaaagagggtgt |
40203040 |
T |
|
| Q |
201 |
ttgttgtgtgtatgtgctgcccttttgggcactcttgcttataacaatattagatgatttgaataaacgtgt---gt--ctagtttatgcaatgaaggaa |
295 |
Q |
| |
|
| ||||||| | || |||||||||| |||||||||||||||| ||||| |||| |||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
40203039 |
tgtgtgtgtgtgtctgttgcccttttgagcactcttgcttataa---tattaaatgagttgaataaacgtgttgtgtaactagtttatgcaatgaaggaa |
40202943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University