View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6540_high_41 (Length: 290)
Name: NF6540_high_41
Description: NF6540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6540_high_41 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 33 - 272
Target Start/End: Complemental strand, 43509227 - 43508988
Alignment:
| Q |
33 |
tggatcactctcgttgactaagattatgtgcaattttaaattcaattgtagaactgttactaattatctaacagctgacatcaatagtattctatcacaa |
132 |
Q |
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| T |
43509227 |
tggatcactctcgttgactaagattatgtgcaattttaaattcaattgtagaactgttactaattatctaacagctgacatcaatagtattctatcacaa |
43509128 |
T |
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| Q |
133 |
caaaattgaatgcaacaaataaattcttttcatgtttatcttgaacgtgatgtatgacaccggatcatttgcatttgctcccggtttcatataccagtac |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43509127 |
caaaattgaatgcaacaaataaattcttttcatgtttatcttgaacgtgatgtatgacaccggatcatttgcatttgctcccggtttcatataccagtac |
43509028 |
T |
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| Q |
233 |
actgtatgttataactatttggatttgctcttgtcaaaaa |
272 |
Q |
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||||||||||||||||||||||||||||| |||||||||| |
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| T |
43509027 |
actgtatgttataactatttggatttgcttttgtcaaaaa |
43508988 |
T |
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